Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq115 125 1e-23 seq35 114 3e-20 seq100 113 9e-20 seq123 87.8 4e-12 >seq115 Length=3126412 Score = 125 bits (138), Expect = 1e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 280251 GTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATC 280310 || |||||||| |||||| |||| | || ||||| || |||||||| ||||||||||| Sbjct 975225 GTGTGGAAGCACCCCAACCTGCGCGTCGCGTACGTGGCGCAGCACGCGTTCCACCACATT 975166 Query 280311 GAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGCAAGTGGGCAG 280370 |||||||||||||||||||| || ||||| ||||| |||||||| || || | || || Sbjct 975165 GAGAACCACCTGGACATGACCCCCAACCAGTACATCCAGTGGCGTTACGCCACCGGCGAG 975106 Query 280371 GATCTGGAGTCGGTGGA 280387 || | ||||| |||| Sbjct 975105 GACCGCGAGTCCCTGGA 975089 Score = 120 bits (132), Expect = 6e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| ||||| |||| || ||||| || || |||||||| ||||| ||||| ||| Sbjct 977188 GGTGAGGACCTGTGCAACTGCGAGTTCTCCCTGGCCTATGGTGGCAAGATCCTGCTGAAC 977129 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 | ||||| || | ||||| ||| | || || || || ||| ||||| || || Sbjct 977128 AACGCGCGCCTGCACCTGAAGCGCGGCCAGCGCTACGGCCTGTGCGGCCCCAACGGCGCC 977069 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| || || |||||||||||||| || || |||||||| || || || | Sbjct 977068 GGCAAGTCGACCCTGATGCGCGCCATTGCCAATGGCCAGCTGGACGGCTTCCCCCCCAAG 977009 Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTC 279568 ||| | | || ||||| || |||||||||||||| |||| Sbjct 977008 AGCGAGCTGCGCACCGTGTACGTGGAGCACGACATCGATGCCTC 976965 Score = 84.2 bits (92), Expect = 4e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 279948 GGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGAAG 280007 ||||||||||| || ||| ||||||| ||||||||||||||||| ||||| Sbjct 975887 GGCAACCTGTCCAAGTTTGTGCAGCAGCGCCCCGAGGCGGCCGCCTACTACAACCTGGCC 975828 Query 280008 GACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGG 280053 ||||||||| ||||||||| | || ||||| || || ||||||| Sbjct 975827 GACGCCACCACCAAGTGGGTGCTGCCCGAGCCCGGCTTCCTGGAGG 975782 >seq35 Length=2876677 Score = 114 bits (126), Expect = 3e-20 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142498 GAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT 142557 |||| ||||||||||||||||||||||||||| || ||||||| || |||||||||||| Sbjct 513193 GAGAGGGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGT 513252 Query 142558 TCGAGCCCCACATCGGGC 142575 |||||||||||||||||| Sbjct 513253 TCGAGCCCCACATCGGGC 513270 >seq100 Length=2003218 Score = 113 bits (124), Expect = 9e-20 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 17287 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17228 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 17227 CCCACATCGGGC 17216 Score = 113 bits (124), Expect = 9e-20 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 54195 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 54254 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 54255 CCCACATCGGGC 54266 >seq123 Length=4192086 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 142416 CTCGCCATAGCTCAATTGGAAGAGCGAAGGACTGTAATTGTTTATTTGTCATCCTTAGGT 142475 ||| |||||||||| ||||||||||||||||||||||| | |||| |||||||||| Sbjct 3385995 CTCACCATAGCTCAGTTGGAAGAGCGAAGGACTGTAATGCACAACTTGTTATCCTTAGGT 3386054 Query 142476 ACCTGGATCGAAACCGGGTGGTGAGA 142501 || | ||||| | ||||||||||| Sbjct 3386055 CCCCCGTTCGAACCGGGGTGGTGAGA 3386080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834692934560