Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq138 105 7e-18 seq112 91.5 2e-13 seq117 82.4 8e-11 >seq138 Length=2592956 Score = 105 bits (116), Expect = 7e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||| |||||| ||||| || ||||| |||| ||||| || Sbjct 406345 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTATAATCGGCCAAGGTCCGGCCG 406286 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| ||||| ||||||||||||| || | || ||||||| Sbjct 406285 TCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 406226 Query 42114 TCC 42116 ||| Sbjct 406225 TCC 406223 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 42033 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 42092 ||||| ||||| ||||| | || || |||||||| |||||||| ||||| ||||||||| Sbjct 406778 TAATCGGCCAGCGTCCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGG 406719 Query 42093 TCGGCTGGCACGCTCTCCTTGTCC 42116 |||| || | || |||||||||| Sbjct 406718 TCGGGCGGGATGCCCTCCTTGTCC 406695 >seq112 Length=2452761 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||| |||||| || || || || || || || || || || Sbjct 1009592 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGCGTACGGCCG 1009651 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| ||||| ||||||||||||| || | || ||||||| Sbjct 1009652 TCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTG 1009711 Query 42114 TCC 42116 ||| Sbjct 1009712 TCC 1009714 >seq117 Length=2441637 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || ||||| || || |||| || |||||||| || || || | Sbjct 1798840 CCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGA 1798899 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 |||| ||||||||||||| || | || |||||||||| Sbjct 1798900 TGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 1798937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211713574400