Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq148 816 0.0 >seq148 Length=122497 Score = 816 bits (904), Expect = 0.0 Identities = 776/992 (78%), Gaps = 0/992 (0%) Strand=Plus/Plus Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588 ||| || |||| | || | |||||||||||||| |||||||||||||| |||||||| Sbjct 77895 TCAACAACAGCTAAATCTAATGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 77954 Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648 || | ||||||||||| | ||||||||| ||||| | ||||||||||| ||| Sbjct 77955 CCTAAGTTAGCACGGTTGATAATGTCTGCCCAAGTGTTGATTACACGACCTTGTGAATCT 78014 Query 7649 ATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGA 7708 | | || ||||||||||||||||| || | |||||||||||| || || ||| | | Sbjct 78015 ACAACTGATTGGTTGAAGTTGAAACCATTTAAGTTGAATGCCATAGTTGAAATACCTAAA 78074 Query 7709 GCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAG 7768 ||||||||||| || |||||||||||||| || || | ||||||||| | ||||| ||| Sbjct 78075 GCAGTGAACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 78134 Query 7769 TTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATG 7828 |||||||| ||||| |||||||| || | |||||| ||||| || ||||| ||||||||| Sbjct 78135 TTGTTGAATGAAGCATATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATG 78194 Query 7829 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTG 7888 ||||| || ||||||||||||||||| || ||||| | ||| || || ||||| Sbjct 78195 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTA 78254 Query 7889 GTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCA 7948 |||||||||| | |||||| |||||||| ||||| ||||| ||| ||| | |||||| Sbjct 78255 GTTTCACGAATTAAAGAAGAAGTTACAAGTGAACCGTGCATTGCAGAGAATAATGAACCA 78314 Query 7949 CCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCT 8008 ||||| |||||||| || || ||||||||||| |||||||| || ||||||||||| ||| Sbjct 78315 CCAAATACACCAGCTACACCAAGCATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCT 78374 Query 8009 TGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAA 8068 ||||| || | |||| ||||||| ||||| ||||| || | ||||||| ||||||||||| Sbjct 78375 TGGAATACGATCATGAAGTTGAAAGTACCTGAGATACCTAAAGGCATACCGTCAGAGAAA 78434 Query 8069 GAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAG 8128 ||||||||||||| || |||| | ||||||||| | |||||||||||||| || ||| Sbjct 78435 GAACCTTGACCGAGTGGGTAGATAATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAG 78494 Query 8129 TATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCC 8188 || || || |||||| ||||||||||||| |||| |||| | |||||| ||||||||| Sbjct 78495 TAAGCAACTGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCC 78554 Query 8189 ATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTG 8248 ||||| | | | | ||| | | |||||| | | | |||||| |||||||||||||| Sbjct 78555 ATGTAAGAACATACACCTAAGAAGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTG 78614 Query 8249 TAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCG 8308 || | ||||||||| | ||| || |||||||| || || |||||||| | ||| |||||| Sbjct 78615 TATAACCACTCATCTAAAGATGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCGATAGCG 78674 Query 8309 TTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCG 8368 ||||| | ||||| || ||||||| |||||||||||| || || | | ||||||| Sbjct 78675 TTAGATGTAGGAATAATTGCACCAGTGATGATGTTGTTTCCGTATAATAATGAACCAGAT 78734 Query 8369 ACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAAA 8428 || || |||||||| || || || || ||||||||||| |||| || |||| |||||| Sbjct 78735 ACAGGCTCACGGATACCATCGATATCAACAGGAGGAGCCGCGATAAACGCGATAATGAAA 78794 Query 8429 CAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGA 8488 | || |||| | || ||||| ||||| | ||||| |||||||||| || | | Sbjct 78795 ACAGAAGTTGCAGTTAAAAGAGTAGGGATCATTAATACACCAAACCAACCGATGTATAAA 78854 Query 8489 CGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 || || | ||| |||||||| | ||| || Sbjct 78855 CGGTTTTCAGTGCTAGTTACCCACTCACAAAA 78886 Score = 609 bits (674), Expect = 3e-169 Identities = 757/1033 (73%), Gaps = 4/1033 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| || || || ||||| ||||||| |||||||| || ||||| Sbjct 32655 AGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACAAGTTTTTCATGAGGCTGATCT 32596 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||| || || || || || || |||||||| || Sbjct 32595 TGAGCAGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTTGTATAGAAAGTT 32536 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTC-TAAG 6441 || || || ||||| ||||| || | || ||||||||||| || ||||| || | ||| Sbjct 32535 TCAAATTCAGGATCTTCCGCAGCGCGAATTTCTTGTGAAACGAAATCATATGCACGTAAA 32476 Query 6442 GTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501 |||| || | ||| | || ||||| | |||||||||| | || |||||||| Sbjct 32475 TTTAAA-GCTAAACCTACAACGCCAATAGCACTCATCCAAAGACCAGTTACTGGAACAAA 32417 Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561 | ||||||||| |||| |||||| || || || || | |||||| || || ||||| Sbjct 32416 TAACATAAAGAAGTGTAACCAACGTTTGTTTGAAAAAGCTACACCAAAAATTTGTGACCA 32357 Query 6562 GAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTT 6621 ||||||||| ||||| ||||| ||||| || || || | ||||| || | |||||| Sbjct 32356 GAAACGATTTGCCGTAACCATTGAATATGTTTCTTCAGCCTGTGTTGGGTTAAACGCACG 32297 Query 6622 GAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAAT 6681 ||| || |||| |||||||||||||| | || || |||||||| ||||||||||| Sbjct 32296 GAATGTGTTTGCACCATCACCATCTTCAAATAGTGTGTTTTCTACAGTTGCACCGTGAAT 32237 Query 6682 AGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAG 6741 ||||| || ||||| |||| | | ||| ||||||||||||||||| || ||||| | Sbjct 32236 CGCACAAAGTAATGCAGCACCAAGTACACCCGCTACACCCATCATATGGAAAGGGTTTAA 32177 Query 6742 CGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAA 6801 ||||||||||||||||| || | ||| | | ||| ||||| || || || ||||| || Sbjct 32176 AGTCCAGTTGTGGAAGCCTTGGAAGAATAAAATGAATCGGAAAATTGCAGCTACACCGAA 32117 Query 6802 CGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAA 6861 || ||||| ||||||| || ||||| | |||||| || | || ||||| || || Sbjct 32116 GCTAGGAGCAAAAAACCAACCAGATTGTCCTAAAGGATAAATTAAGAAAACAGAAACGAA 32057 Query 6862 GACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGTGC 6921 |||| ||| ||| | || || || || || || || |||||||| ||| |||||| Sbjct 32056 TACAGAAATAGGAGCTGAGAAAGCAATAGCGTTATATGGACGAATTTTTACTGAACGTGC 31997 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 || |||||||| |||||||||||||| ||||| | ||| | ||||| || || ||||| Sbjct 31996 AATTTCAAACTGACGAAGCATGAAACCAATAAGAGAAAAAGACCCGTGAAGGGCAACAAA 31937 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 | ||| || || || | ||| ||| || ||||| || |||||||| |||||||| Sbjct 31936 TGTCCAAAGACCACCTAATTGACACCAACGAGTAAAATCACCTTGAGCTTCAGGACCCCA 31877 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 || | | || || || || | | | || ||||||||||||||||| || | ||| Sbjct 31876 AAGGAATAATAAAGAGTGACCCATACTATTCGCTGGAGTTGATACAGCAGCTGTTAAGAA 31817 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 || || || || | ||| ||||| || | || ||||| ||||| || || || || Sbjct 31816 GTTGCAACCTTCTAAATATGAAGACGCTAAACCATGAGTATACCAAGATGTTACAAATGT 31757 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 || || |||| |||||| || ||||| ||||| || |||||||| | | | ||||| Sbjct 31756 AGTTCCTGTGAACCAACCACCTAGTGCAAGGTATGCTGTAGGGAATAATAATAACCCTGA 31697 Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAACCACCC 7281 ||| || || |||||||| | ||||| |||||||||||| | ||||||||||| || Sbjct 31696 CCATCCTACGAAAACGAAACGGTCACGACGAAGCCAGTCATCAACAACATCAAACCAACC 31637 Query 7282 CCTTGTTGTTCTT 7294 | ||| ||||| Sbjct 31636 GC--GTTTTTCTT 31626 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 176119 GTATGGGCAGGGAGGGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCT 176178 || ||||| | | ||||||||||| ||||||||||||||| ||||||||| ||| || Sbjct 9155 GTTTGGGCCGAGCTGGATTTGAACCAGCGTAGGCAGAGCCAGTGGATTTACAATCCACCC 9096 Query 176179 CCATTAACCACTCGGACACCTACCCTAA 176206 ||||||||||||||| || | |||| || Sbjct 9095 CCATTAACCACTCGGGCATCGACCCGAA 9068 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 176119 GTATGGGCAGGGAGGGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCT 176178 || ||||| | | ||||||||||| ||||||||||||||| ||||||||| ||| || Sbjct 113640 GTTTGGGCCGAGCTGGATTTGAACCAGCGTAGGCAGAGCCAGTGGATTTACAATCCACCC 113581 Query 176179 CCATTAACCACTCGGACACCTACCCTAA 176206 ||||||||||||||| || | |||| || Sbjct 113580 CCATTAACCACTCGGGCATCGACCCGAA 113553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622123555750400