Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq112 102 9e-17 seq117 96.9 4e-15 seq35 96.9 4e-15 seq138 91.5 2e-13 >seq112 Length=2452761 Score = 102 bits (112), Expect = 9e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 || ||||| || | | |||| |||||| |||| || |||||| ||||| || ||| Sbjct 1009574 TAGTTGCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTATAG 1009633 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 |||| || || || |||| || ||||||||||| ||||| || | ||||||||||||| Sbjct 1009634 TCGGCGAGCGTACGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCG 1009693 Query 46481 GCCGGCACGCTCTCCTTGTCC 46501 | || | || |||||||||| Sbjct 1009694 GGGGGAATGCCCTCCTTGTCC 1009714 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| || ||||||| || || || || Sbjct 1012262 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTACGGCCG 1012321 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 || || ||||||||||| ||||| || | |||||||||||||| Sbjct 1012322 TCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGG 1012364 >seq117 Length=2441637 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||||| || ||||| |||| || ||||||||||| || || | Sbjct 1798840 CCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGA 1798899 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 | | |||||||||||||| ||| | || |||||||||| Sbjct 1798900 TGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 1798937 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||||| || ||||| |||| || |||||||||||||| || || | |||||||| Sbjct 420299 TGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCT 420240 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCC 46501 |||||| ||| | || |||||||||| Sbjct 420239 GGTCGGGCGGGATGCCCTCCTTGTCC 420214 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 |||||||| || ||||| |||| ||||||||| |||||||||||||| || |||||||| Sbjct 1799115 GTGTCGCTGGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGCGTCTTCACAAAGATC 1799174 Query 46589 TGCAT 46593 ||||| Sbjct 1799175 TGCAT 1799179 >seq35 Length=2876677 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 2472704 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCG 2472645 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||||||||| |||| |||||||||||| Sbjct 2472644 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 2472604 >seq138 Length=2592956 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| || || || || |||| | || || || Sbjct 406345 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTATAATCGGCCAAGGTCCGGCCG 406286 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| || | |||||||||||||| ||| | || ||||||| Sbjct 406285 TCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 406226 Query 46499 TCC 46501 ||| Sbjct 406225 TCC 406223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237269523200