Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq148 783 0.0 seq149 84.2 3e-11 >seq148 Length=122497 Score = 783 bits (868), Expect = 0.0 Identities = 759/973 (78%), Gaps = 2/973 (0%) Strand=Plus/Minus Query 179748 TTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTG 179807 || || ||||||||||| || | ||||| | || |||||||||| || || | Sbjct 78886 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 78827 Query 179808 ATGATTCCAACTCTGTTGGCAGCAACTATCTGCTT-CATCGTCGCCTTCATCGCTGCTCC 179866 ||||| || ||||| || | |||||| |||| || ||| |||| || ||||| ||||| Sbjct 78826 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTTTTCATTATCGCGTTTATCGCGGCTCC 78768 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926 ||||| || |||||||| |||||||| || || |||||||| | | || || ||||| Sbjct 78767 TCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAACAA 78708 Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 179986 ||||||| |||||||| || ||||| | || ||||| || ||| | |||||||| || || Sbjct 78707 CATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCAAT 78648 Query 179987 CTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGT 180046 |||||||| ||||| | || |||||| | || ||||||||||||| ||||||| |||| Sbjct 78647 TTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGT 78588 Query 180047 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCG 180106 | |||||| | | || | | | | |||||||||||||| |||||| | |||| || Sbjct 78587 TTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTTCCG 78528 Query 180107 CTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 180166 || |||||||| || |||||| || || || || || ||||| |||||||| | || Sbjct 78527 TTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 78468 Query 180167 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCAT 180226 ||||||| | |||| || ||||||||||||| |||||||||| ||||| | || || Sbjct 78467 TGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTAT 78408 Query 180227 TTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCC 180286 || || || ||||||| |||| | || |||||||| ||||||||||| || |||||||| Sbjct 78407 CTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCACCC 78348 Query 180287 CTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGG 180346 ||||||||||| || ||||| ||||| || || |||||| | ||||| ||||||||||| Sbjct 78347 ATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 78288 Query 180347 TTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGG 180406 |||||| || || ||||| | |||||||||| ||||||| || || ||| | || Sbjct 78287 TTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGCTAACGAAGG 78228 Query 180407 TTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGG 180466 |||||| || |||||||||||||| || |||||||||||||| || ||||| |||||||| Sbjct 78227 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCGG 78168 Query 180467 TCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGC 180526 |||| | || ||||| ||||| || ||||||||||| |||||| | ||||||||| | || Sbjct 78167 TCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 78108 Query 180527 AGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 180586 || ||||| || ||||| || ||||||||||| | || | || ||||||||||| Sbjct 78107 TGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAA 78048 Query 180587 CCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACAC 180646 | | || ||||||||||||||||| || | | ||| ||||||||||| ||||||| Sbjct 78047 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 77988 Query 180647 TTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGC 180706 |||||||||| | ||||||| ||| | ||||||||||| |||||||||||||| || Sbjct 77987 TTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGC 77928 Query 180707 TCACAACTTCCCA 180719 ||||||||||||| Sbjct 77927 TCACAACTTCCCA 77915 Score = 583 bits (646), Expect = 1e-161 Identities = 748/1027 (73%), Gaps = 3/1027 (0%) Strand=Plus/Plus Query 181421 TGGTTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCT 181480 |||||||| | |||||||||||||| || ||||| || || || || || ||||| Sbjct 31640 TGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGGTCA 31699 Query 181481 GGACTACTTCTTTTTCCC-ACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTAC 181539 || || || || ||||| || || || |||||| | || || ||| |||| || ||||| Sbjct 31700 GGGTTA-TTATTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAACTAC 31758 Query 181540 TTTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTT 181599 ||||| || || ||||| || || || || |||||||| || | || ||| || || Sbjct 31759 ATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAACTT 31818 Query 181600 CCTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 181659 | | ||||| ||||| ||||| || || | ||||||||| ||| | | | ||||| Sbjct 31819 CTTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCTTTATTATTCCTTTG 31878 Query 181660 GGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTT 181719 ||||||||||||||| || ||||| || ||| ||| | || || || ||| | || Sbjct 31879 GGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGACATT 31938 Query 181720 TGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGC 181779 ||| || || ||||| | || ||||||| ||||| ||||| | || |||||| |||| Sbjct 31939 TGTTGCCCTTCACGGGTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 31998 Query 181780 TCGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATT 181839 ||| | | ||| || || || || || |||||||| || | ||||||| ||||||| Sbjct 31999 ACGTTCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTTCTGTATT 32058 Query 181840 CGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTT 181899 ||| ||||| || | || |||||| | |||||||| ||||||| ||||| || || || Sbjct 32059 CGTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTCCTAGCTT 32118 Query 181900 CGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCT 181959 |||||| || || |||||||| ||| || | ||| |||| ||||| || || ||||| | Sbjct 32119 CGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACTGGACTTT 32178 Query 181960 CAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAAT 182019 || || ||||||||||||||||| || ||| | || |||| |||||||| | ||| || Sbjct 32179 AAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTTGTGCGAT 32238 Query 182020 TCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAA 182079 |||||||| || || || || || || | | |||| ||||| ||||| || ||| Sbjct 32239 TCACGGTGCAACTGTAGAAAACACACTATTTGAAGATGGTGATGGTGCAAACACATTCCG 32298 Query 182080 AGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTG 182139 || || | |||| || | |||||||| |||||||||||||| || || || ||||| Sbjct 32299 TGCGTTTAACCCAACACAGGCTGAAGAAACATATTCAATGGTTACGGCAAATCGTTTCTG 32358 Query 182140 GTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTT 182199 ||| || || || ||| | || ||| || || | ||||| || ||||||||| | || Sbjct 32359 GTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATT 32418 Query 182200 TGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCT 182259 |||||| || | |||||||||| ||| | || || || | ||| | ||| | || | Sbjct 32419 TGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGCGTTGTAGGTTTAGCTTTAAATTT 32478 Query 182260 TCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGAC 182319 ||||| ||||| || || || |||||||| | || | ||||| || || || || || Sbjct 32479 ACGTGCATATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAATTTGAAAC 32538 Query 182320 GTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGA 182379 ||||| ||||| || ||||| || || |||||| | ||||| ||| | || | || Sbjct 32539 TTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 32598 Query 182380 TCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACTGTG 182439 ||| || ||||| || |||| ||||||||||| || ||||| | || ||||| || | Sbjct 32599 TCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCT-TT 32657 Query 182440 AACGGTT 182446 || |||| Sbjct 32658 AATGGTT 32664 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 141255 TCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAATC 141314 |||||||||||||||||| ||||| | || ||||||| || ||||||||||||||| || Sbjct 95890 TCCTCAGTAGCTCAGCGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCAAGTC 95831 Query 141315 CTACCTGGGGAG 141326 |||||||||||| Sbjct 95830 CTACCTGGGGAG 95819 >seq149 Length=72121 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142216 GGGTGTAGCTCAGTTTGGTAGAGCACTCGCTTTGGGAGCGAGTGGCCGTAGGTTCAAATC 142275 ||||||||| |||| |||||| || || ||||||||||| || | ||||||||| |||| Sbjct 6438 GGGTGTAGCGCAGTCTGGTAGCGCGCTTGCTTTGGGAGCAAGATGTCGTAGGTTCGAATC 6497 Query 142276 CTATCACCCCGATT 142289 ||||||||| |||| Sbjct 6498 CTATCACCCTGATT 6511 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142216 GGGTGTAGCTCAGTTTGGTAGAGCACTCGCTTTGGGAGCGAGTGGCCGTAGGTTCAAATC 142275 ||||||||| |||| |||||| || || ||||||||||| || | ||||||||| |||| Sbjct 63069 GGGTGTAGCGCAGTCTGGTAGCGCGCTTGCTTTGGGAGCAAGATGTCGTAGGTTCGAATC 63128 Query 142276 CTATCACCCCGATT 142289 ||||||||| |||| Sbjct 63129 CTATCACCCTGATT 63142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610395579206400