Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq148 677 0.0 >seq148 Length=122497 Score = 677 bits (750), Expect = 0.0 Identities = 742/984 (75%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 169402 TTTTGCGAGTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTA 169461 ||||| ||||||||||| || | ||| | | || | |||||||||||||| || Sbjct 78886 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 78827 Query 169462 ATGATTCCATGCT-TACTCACAGCAGCAGCATGTTTCATCGTTGCATTCATTGCAGCACC 169520 ||||| || | || | | || ||| | | |||||| | || || || || || || Sbjct 78826 ATGATCCC-TACTCTTTTAACTGCAACTTCTGTTTTCATTATCGCGTTTATCGCGGCTCC 78768 Query 169521 TCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAA 169580 |||||| |||||||| || ||| | || || ||| | ||||| || || || || ||||| Sbjct 78767 TCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAACAA 78708 Query 169581 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAAT 169640 ||||||| |||||||| || |||| |||| ||||||||||| |||||||||||||||| Sbjct 78707 CATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCAAT 78648 Query 169641 CTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAAT 169700 |||||||| ||| || | ||||| ||||| || || ||||||||||| || | | | Sbjct 78647 TTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGT 78588 Query 169701 CTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAG 169760 | |||||| | | ||| | | | |||||||| | | |||||| |||| | | | Sbjct 78587 TTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTTCCG 78528 Query 169761 ATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGC 169820 ||||| |||||||| |||||| ||||| ||||| |||||||| |||| || || Sbjct 78527 TTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 78468 Query 169821 TGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 169880 ||||||| | | |||||| | ||||| ||||| |||||||| |||||||| ||||||| Sbjct 78467 TGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTAT 78408 Query 169881 CTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCC 169940 |||||||||||||||||| ||| |||| |||||||| ||||| |||||||| ||||| || Sbjct 78407 CTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCACCC 78348 Query 169941 TTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGG 170000 ||||||||| || ||||| || | || || || || |||||||| |||||||| || Sbjct 78347 ATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 78288 Query 170001 TTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGG 170060 ||||||||| ||||| ||| |||| | ||||| || || | || ||| ||| | || Sbjct 78287 TTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGCTAACGAAGG 78228 Query 170061 TTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGG 170120 ||| || ||||| |||||||||||||| |||||||| || ||||| || || ||||| || Sbjct 78227 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCGG 78168 Query 170121 TCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGC 170180 |||| | || ||||| |||||||||||||||||||| | ||||||||||| |||| Sbjct 78167 TCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 78108 Query 170181 AGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAA 170240 | || || ||||| || | ||||| || || | ||||| | || ||||||||||| Sbjct 78107 TGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAA 78048 Query 170241 CTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAAC 170300 ||| |||||||||||||| |||||||||||||| ||| | | || | || || Sbjct 78047 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 77988 Query 170301 ATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGC 170360 |||| || || | ||| | || ||||| ||||||||||| ||||| || | || || Sbjct 77987 TTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGC 77928 Query 170361 ACACAACTTCCCACTAGACCTAGC 170384 |||||||||||| |||| |||| Sbjct 77927 TCACAACTTCCCATTAGATTTAGC 77904 Score = 459 bits (508), Expect = 3e-124 Identities = 729/1045 (70%), Gaps = 23/1045 (2%) Strand=Plus/Plus Query 170523 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGG 170582 ||||||||||||||| |||| |||||| | | || ||||| || ||| |||||||| Sbjct 31637 GGTTGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGG 31696 Query 170583 TCTGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACT 170642 || || | ||| | | ||| |||||||| || | |||||||||||| ||| ||| Sbjct 31697 TCAGGGTTATTATTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAACT 31756 Query 170643 ACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAAC 170702 || || || ||||| |||||||| |||||| | || || |||||| | || || || ||| Sbjct 31757 ACATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAAC 31816 Query 170703 TTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 170762 ||| ||||||| || || || || || | | |||||||| | | | |||||| Sbjct 31817 TTCTTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCTTTATTATTCCTT 31876 Query 170763 TGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAAC 170822 ||||| |||||||| |||||| ||| |||||||| ||| | || ||| | |||| Sbjct 31877 TGGGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGACA 31936 Query 170823 TTTGTAGCATTACATGGAGTC-TTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGAT 170881 ||||| || | || || ||| ||| || || ||||||||||| | || ||||| || Sbjct 31937 TTTGTTGCCCTTCACGG-GTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAAT 31995 Query 170882 CGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGT 170941 ||| | ||| || | || || ||||| | || ||||| ||| ||| | || Sbjct 31996 TGCACGTTCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTTCTGT 32055 Query 170942 CTTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATC 171001 ||| | | || | || ||||| |||| || ||||||| || || || Sbjct 32056 ATTCGTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTCCTAG 32115 Query 171002 ATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTAC 171061 |||||||| || |||||||| || | || |||||| | ||||| ||||||||| || Sbjct 32116 CTTCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACTGGAC 32175 Query 171062 ATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGC 171121 || || || || || ||||||||||| || || |||| |||| |||||| | ||||| Sbjct 32176 TTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTTGTGC 32235 Query 171122 CATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAA 171181 ||||| |||||||| || | |||||| | | ||||| || |||| Sbjct 32236 GATTCACGGTGCAACTGTAGAAAACACACTATTTGAAG------------ATGGTGAT-- 32281 Query 171182 TAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAG 171241 | |||| ||||||||||| ||| | || ||||||| |||||||| || Sbjct 32282 ---GGTGCAAA----CACATTCCGTGCGTTTAACCCAACACAGGCTGAAGAAACATATTC 32334 Query 171242 TATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAG 171301 ||| |||| ||||| | ||||||||||| || |||||| | ||||| || |||||| | Sbjct 32335 AATGGTTACGGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACG 32394 Query 171302 ATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGG 171361 | ||||||||| ||||||| || ||||| || | ||| | |||| |||| || Sbjct 32395 TTGGTTACACTTCTTTATGTTATTTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGG 32454 Query 171362 TATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGC 171421 | |||||| |||| | || | | ||||| ||||| || || ||||| || | || Sbjct 32455 CGTTGTAGGTTTAGCTTTAAATTTACGTGCATATGATTTCGTTTCACAAGAAATTCGCGC 32514 Query 171422 AGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTAT 171481 || ||||| || || || || |||||||| || || ||||| ||| | || |||||||| Sbjct 32515 TGCGGAAGATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTAT 32574 Query 171482 GAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGT 171541 | || |||||| | | || || || ||||| || | |||||||| || || || Sbjct 32575 TCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGT 32634 Query 171542 GTTACCAAGAGGTAACGCACTTTAA 171566 |||||| | || ||||| |||||| Sbjct 32635 TTTACCACGTGGAAACGCTCTTTAA 32659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579211641574400