Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq148 639 2e-178 >seq148 Length=122497 Score = 639 bits (708), Expect = 2e-178 Identities = 728/977 (75%), Gaps = 0/977 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 || || || |||||||| ||| | ||| | | || | |||||||| |||||| | Sbjct 78886 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 78827 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| | | | || ||| | | ||||| | || || || || || ||| Sbjct 78826 ATGATCCCTACTCTTTTAACTGCAACTTCTGTTTTCATTATCGCGTTTATCGCGGCTCCT 78767 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 ||||| |||||||| || ||| | || || || | ||||| || ||||| || |||||| Sbjct 78766 CCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAACAAC 78707 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 |||||| |||||||| || |||| |||| ||||| || ||| | ||||||||||| || Sbjct 78706 ATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCAATT 78647 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| ||| | ||||||| ||||| ||||| ||||||||||| || | | | Sbjct 78646 TGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTT 78587 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | |||||| | | ||| | | | |||||||| | | |||||| |||| | | | Sbjct 78586 TGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTTCCGT 78527 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 ||||||||| | |||||||| || || || |||||||| || | ||||| ||| Sbjct 78526 TTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 78467 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| || | || ||| ||||||| ||||| |||||||| |||||||| |||||||| Sbjct 78466 GTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATC 78407 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 |||||||| |||||||| ||| |||| |||||||| ||||| |||||||| ||||| || Sbjct 78406 TCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCACCCA 78347 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 ||||||||| || ||||| || | ||||| || || |||||||| |||||||||||| Sbjct 78346 TTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGGT 78287 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || | || || |||||| |||| | || || |||||| |||||| ||| | || Sbjct 78286 TCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGCTAACGAAGGT 78227 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 ||||| ||||| |||||||||||||| |||||||| || ||||| || || ||||| ||| Sbjct 78226 TACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCGGT 78167 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599 ||| | || ||||| |||||||| ||||||||||| | | ||||||||| |||| Sbjct 78166 CGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCT 78107 Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659 | || || ||||| || | ||||| || || | ||||| | || |||||||||||| Sbjct 78106 GCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAAC 78047 Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACA 172719 | || |||||||||||||||||||||||||||||| | | ||| | | || Sbjct 78046 TTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACACT 77987 Query 172720 TGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCA 172779 |||| ||| || | ||| | || ||| ||||||||||||| ||||| || | || || Sbjct 77986 TGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCT 77927 Query 172780 CACAACTTCCCATTAGA 172796 ||||||||||||||||| Sbjct 77926 CACAACTTCCCATTAGA 77910 Score = 462 bits (512), Expect = 3e-125 Identities = 732/1046 (70%), Gaps = 25/1046 (2%) Strand=Plus/Plus Query 172945 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGG 173004 ||||||||||||||| |||| |||||| | | || |||||||| ||| | |||||| Sbjct 31637 GGTTGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGG 31696 Query 173005 TCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACT 173064 || || | ||| | | ||| || |||||| | | |||||||||||| ||||||| Sbjct 31697 TCAGGGTTATTATTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAACT 31756 Query 173065 ACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAAC 173124 || || || ||||| |||||||| |||||| | || ||||||||| | ||||| ||| Sbjct 31757 ACATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAAC 31816 Query 173125 TTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTT 173184 || |||||||| || || || || || | | |||||||| | | | |||||| Sbjct 31817 TTCTTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCTTTATTATTCCTT 31876 Query 173185 TGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAAC 173244 ||||| |||||||| |||||| || ||||||| ||| | || || || |||| Sbjct 31877 TGGGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGACA 31936 Query 173245 TTTGTAGCATTACATGGAGTC-TTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGAT 173303 ||||| || | || || ||| ||| || || ||||||||||| ||||||||||| || Sbjct 31937 TTTGTTGCCCTTCACGG-GTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAAT 31995 Query 173304 CGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGT 173363 ||| | ||| || | || || ||||| | || ||||| ||| ||| | || Sbjct 31996 TGCACGTTCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTTCTGT 32055 Query 173364 CTTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTC 173423 ||| | | || ||||| || || |||| || ||||||| || || ||| Sbjct 32056 ATTCGTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTCCTAG 32115 Query 173424 ATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTAC 173483 |||||||| || ||||| || || | || |||||| | ||||| ||||||||| || Sbjct 32116 CTTCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACTGGAC 32175 Query 173484 ATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGC 173543 || || || || || ||||||||||| || || |||| |||| |||||||| ||||| Sbjct 32176 TTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTTGTGC 32235 Query 173544 CATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGG 173603 ||||| |||||||| || | |||||| | | ||||| || ||| || Sbjct 32236 GATTCACGGTGCAACTGTAGAAAACACACTATTTGAAG------------ATGGTGATGG 32283 Query 173604 TAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAG 173663 | ||| | || ||| | || ||| | || ||||||| |||||||| ||| Sbjct 32284 -----TGCAAAC----ACATTCCGTGCGTTTAACCCAACACAGGCTGAAGAAACATATTC 32334 Query 173664 TATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAG 173723 ||| |||| || || | ||||||||||| || |||||| | || |||||||||||| | Sbjct 32335 AATGGTTACGGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACG 32394 Query 173724 ATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGG 173783 | ||||||||| | ||||| || || || || | ||| | |||| | || || Sbjct 32395 TTGGTTACACTTCTTTATGTTATTTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGG 32454 Query 173784 TATCGTAGGTCTTGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAG 173842 | |||||| | || |||| ||| | ||||| || || || || ||||| || | | Sbjct 32455 CGTTGTAGGTTTAGC-TTTAAATTTACGTGCATATGATTTCGTTTCACAAGAAATTCGCG 32513 Query 173843 CAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTA 173902 | || |||||||| || || || |||||||| || || ||||| ||| | || ||||||| Sbjct 32514 CTGCGGAAGATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTA 32573 Query 173903 TGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAG 173962 | | || |||||| | || |||||| || ||||| || | ||||| || || || | Sbjct 32574 TTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGG 32633 Query 173963 TGTTACCAAGAGGTAACGCACTTTAA 173988 | |||||| | || ||||| |||||| Sbjct 32634 TTTTACCACGTGGAAACGCTCTTTAA 32659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588050023897600