Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq148 798 0.0 >seq148 Length=122497 Score = 798 bits (884), Expect = 0.0 Identities = 763/974 (78%), Gaps = 2/974 (0%) Strand=Plus/Minus Query 162384 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162443 ||| || |||||||||||| || | ||||| | || |||||||||| || ||| | Sbjct 78887 TTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 78828 Query 162444 GATGATTCCAACTCTGTTGGCAGCAACCATCTGTTT-CATCGTCGCCTTCGTCGCTGCTC 162502 ||||| || ||||| || | ||||| ||||||| ||| |||| || |||| |||| Sbjct 78827 AATGATCCCTACTCTTTTAACTGCAACT-TCTGTTTTCATTATCGCGTTTATCGCGGCTC 78769 Query 162503 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 162562 | ||||| || ||||| || |||||||| || || |||||||| | | || || |||| Sbjct 78768 CTCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAACA 78709 Query 162563 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 162622 |||||||| |||||||| || |||| | || ||||| || ||| | |||||||| || | Sbjct 78708 ACATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCAA 78649 Query 162623 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 162682 | |||||||| ||||| | ||||||||| | || ||||||||||||| |||||| | | Sbjct 78648 TTTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCG 78589 Query 162683 TATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACC 162742 | | |||||| | | || | | | | |||||||| |||||||||||| | |||| || Sbjct 78588 TTTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTTCC 78529 Query 162743 GTCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCGG 162802 || | |||||||||||||||||| || || ||||| ||||| ||||| ||||| | | Sbjct 78528 GTTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAG 78469 Query 162803 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 162862 | || ||| | |||| || |||||||||||||||||||||||| ||||| || |||| Sbjct 78468 CTGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 78409 Query 162863 TCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATC 162922 || ||||| ||||||| |||| | || |||||||| |||||||||||||| ||||| | Sbjct 78408 TCTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCACC 78349 Query 162923 CCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACG 162982 | ||||||||| | ||||| || ||||| || ||||||||| | ||| ||||||||||| Sbjct 78348 CATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 78289 Query 162983 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATG 163042 |||| | || || ||||| | | ||||| || ||||||| || ||| ||| | | Sbjct 78288 GTTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGCTAACGAAG 78229 Query 163043 GTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCG 163102 ||||||| ||||||||||||||||| || ||||||||||| ||||| ||||| ||||||| Sbjct 78228 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCG 78169 Query 163103 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 163162 ||||||| || ||||||||||| |||||||||||||| ||||| || ||||||||| | | Sbjct 78168 GTCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 78109 Query 163163 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 163222 |||| ||||| ||||| || || |||||||| || | || | ||||| |||||||||| Sbjct 78108 CTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCA 78049 Query 163223 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 163282 || | || ||||||||||||||||| || | | ||| || |||||||| | |||| Sbjct 78048 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACA 77989 Query 163283 CCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATG 163342 | ||||||||| || | |||||||| || ||||||||||| ||||||||||| || | Sbjct 77988 CTTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACG 77929 Query 163343 CTCACAACTTCCCA 163356 |||||||||||||| Sbjct 77928 CTCACAACTTCCCA 77915 Score = 524 bits (580), Expect = 8e-144 Identities = 735/1026 (72%), Gaps = 4/1026 (0%) Strand=Plus/Plus Query 163615 GGGTGGTTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGG 163674 || ||||||||||| | |||||||||||| || || |||||||| || | || ||| Sbjct 31637 GGTTGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGG 31696 Query 163675 TCTGGATTACTACTTCTTCCC-ACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTAC 163733 || || ||| || || ||||| || || || | ||| | ||||| ||| | || || || Sbjct 31697 TCAGGGTTATTA-TTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAAC 31755 Query 163734 AACTTTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAA 163793 || || || || || ||||| || ||||| | || |||| ||| | || ||| || Sbjct 31756 TACATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAA 31815 Query 163794 TTTTCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTC- 163852 || | ||||| ||||| ||||| || || | ||||||||| ||| || || ||| Sbjct 31816 CTTCTTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCT-TTATTATTCC 31874 Query 163853 TCTGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGA 163912 | ||||||||||| ||||| || ||||| || ||| ||| | || || || |||| Sbjct 31875 TTTGGGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGA 31934 Query 163913 ATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAAC 163972 ||||| || || ||||| | ||| |||| ||||||||||||||||| || |||||| Sbjct 31935 CATTTGTTGCCCTTCACGGGTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAA 31994 Query 163973 TTGCTCGCCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTG 164032 |||| || | ||| | || || || || ||||||||||| | ||||||| ||| Sbjct 31995 TTGCACGTTCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTTCTG 32054 Query 164033 TCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCAT 164092 | |||||| ||| || | || || ||| | || ||||| ||||||| || ||||| Sbjct 32055 TATTCGTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTCCTA 32114 Query 164093 CTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGA 164152 || || || || ||||| ||| ||||| | |||||| | ||||| || || ||||||| Sbjct 32115 GCTTCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACTGGA 32174 Query 164153 CTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTG 164212 |||| ||||| |||||||||||||| || || ||| |||| || | ||||| || | || Sbjct 32175 CTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTTGTG 32234 Query 164213 CTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCT 164272 | |||||||| | || || ||||| ||| | | ||||||||| || |||||||| | Sbjct 32235 CGATTCACGGTGCAACTGTAGAAAACACACTATTTGAAGATGGTGATGGTGCAAACACAT 32294 Query 164273 TTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCT 164332 | |||||| | | ||||||| ||||| || ||||| ||||| || ||||| || | Sbjct 32295 TCCGTGCGTTTAACCCAACACAGGCTGAAGAAACATATTCAATGGTTACGGCAAATCGTT 32354 Query 164333 TCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGT 164392 ||||||| || || || ||||| || ||||| ||||| || ||| | || || || |||| Sbjct 32355 TCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGT 32414 Query 164393 TGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCA 164452 | ||||| || || | ||||| |||| |||||||| || | || | ||| | | Sbjct 32415 TATTTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGCGTTGTAGGTTTAGCTTTAA 32474 Query 164453 ATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCG 164512 || | ||||| || ||||| || ||||| ||| | || || ||||||||||| || | Sbjct 32475 ATTTACGTGCATATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAATTTG 32534 Query 164513 AGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAG 164572 | ||||||||||| || || || | || |||||||| | ||||| ||| | || | Sbjct 32535 AAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTC 32594 Query 164573 TTGACCAGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGC 164632 || ||||| ||| |||| ||||| || || || | || | || || || | Sbjct 32595 AAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTC 32654 Query 164633 TTTAAT 164638 |||||| Sbjct 32655 TTTAAT 32660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557582884832000