Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq148 699 0.0 >seq148 Length=122497 Score = 699 bits (774), Expect = 0.0 Identities = 749/982 (76%), Gaps = 20/982 (2%) Strand=Plus/Minus Query 164763 tttttGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCT 164822 |||||| |||||||| ||| ||| | |||||| | || |||||||||| ||||| | Sbjct 78887 TTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 78828 Query 164823 TATGATCCC--CTGTTTGCTCGCCGCTACAATTTGTTTT-ATTACTGCATTCATCGCTGC 164879 |||||||| || ||| | | || || | |||||| |||| || || ||||| || Sbjct 78827 AATGATCCCTACTCTTT--TAACTGCAACT-TCTGTTTTCATTATCGCGTTTATCGCGGC 78771 Query 164880 TCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAA 164939 ||| ||||| || || |||||||| ||||| ||||| | ||||| || | ||||| || Sbjct 78770 TCCTCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAA 78711 Query 164940 CAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCC 164999 |||||||||| ||||||| | |||| | |||||||| ||||| | |||||||| || Sbjct 78710 CAACATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCC 78651 Query 165000 TATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGT 165059 ||||||||||||||| | | ||||| ||||| |||||||||||||||||||| | | Sbjct 78650 AATTTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTAT 78591 Query 165060 TGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTA 165119 || | |||||| || | |||||| || |||||||||||||| |||||| | |||| Sbjct 78590 CGTTTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTT 78531 Query 165120 CCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGC 165179 ||| | ||||||||||| ||||| || || || ||||| || ||||| ||| | Sbjct 78530 CCGTTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTAC 78471 Query 165180 CGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGG 165239 || || ||| | |||| || |||||||||| ||||||||| ||||||||| | || Sbjct 78470 AGCTGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGG 78411 Query 165240 TATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCA 165299 |||||| |||||||| |||| ||| |||| |||||||| || || |||||||||||||| Sbjct 78410 TATCTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCA 78351 Query 165300 TCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCA 165359 || ||||||||||| || || ||||| ||||| ||||| || | |||||||| ||||| Sbjct 78350 CCCATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCA 78291 Query 165360 TGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAG--AAC 165417 || ||||| ||||| || | | || || || |||||| | || |||| ||| Sbjct 78290 CGGTTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAA--AACGAATCAGCTAAC 78233 Query 165418 TACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTAC 165477 | ||||| || || || ||||||||||| || || |||||||| || || || || ||| Sbjct 78232 GAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTAC 78173 Query 165478 TTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTC 165537 ||||||||| | ||||||||||| || || |||||||| || ||||| | ||||||||| Sbjct 78172 TTCGGTCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTC 78113 Query 165538 CTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCA 165597 | || || ||||| || |||||||| |||||||||||| | ||| || || |||||| Sbjct 78112 TTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCA 78053 Query 165598 TTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATC--- 165654 |||||| | || ||||||||||||||||| || |||| ||| || |||| || Sbjct 78052 TTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGAT--TC---ACAAGGTCGTG 77998 Query 165655 --ATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATG 165712 ||| |||||||| ||| || | ||||||||| | ||||||||||| ||||| | Sbjct 77997 TAATCAACACTTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACG 77938 Query 165713 AGCGTAACGCTCACAACTTCCC 165734 |||||||||||||||||||||| Sbjct 77937 AGCGTAACGCTCACAACTTCCC 77916 Score = 632 bits (700), Expect = 2e-176 Identities = 756/1024 (74%), Gaps = 2/1024 (0%) Strand=Plus/Plus Query 166155 GGGTGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGG 166214 || ||||| ||||| |||| ||||||||| || || ||||||||||| || || ||| Sbjct 31637 GGTTGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGG 31696 Query 166215 TCTGGACTTCTTCTTCTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGAC 166273 || || || || || ||||| || || || ||||| | || |||||| |||| || || Sbjct 31697 TCAGGG-TTATTATTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAAC 31755 Query 166274 TACTTTCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAGTTATCTGGAGGGTGCAAA 166333 ||| || || || ||||||||||||||| | || ||| | || ||| || Sbjct 31756 TACATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAA 31815 Query 166334 CTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCT 166393 ||| | || || || || || |||||||| || ||||||||| ||| || | | || Sbjct 31816 CTTCTTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCTTTATTATTCCT 31875 Query 166394 CTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGC 166453 ||||||||||| |||||||| ||||| | ||||| ||| | || || |||||| | Sbjct 31876 TTGGGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGAC 31935 Query 166454 CTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAAT 166513 |||||||| || ||||| ||||| | || ||||||||||||||||| ||||||||||| Sbjct 31936 ATTTGTTGCCCTTCACGGGTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAAT 31995 Query 166514 CGCTCGTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGT 166573 || ||| |||| |||||||| || || || || ||||| || | ||||||| |||| Sbjct 31996 TGCACGTTCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTTCTGT 32055 Query 166574 CTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATC 166633 |||||| ||| || | || || ||| | || ||||| |||||||||| ||||| Sbjct 32056 ATTCGTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTCCTAG 32115 Query 166634 TTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGAC 166693 ||||| || | ||||| ||||||||| | | ||| | ||||| |||||||||||||| Sbjct 32116 CTTCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACTGGAC 32175 Query 166694 ACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGC 166753 | ||||| || ||||||||||||||||| ||| | || |||| |||||| |||| ||| Sbjct 32176 TTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTTGTGC 32235 Query 166754 CATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTT 166813 || || |||| || ||||| ||||| || | | |||||||||| ||||| || || Sbjct 32236 GATTCACGGTGCAACTGTAGAAAACACACTATTTGAAGATGGTGATGGTGCAAACACATT 32295 Query 166814 CAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTA 166873 | || || || | || || | |||||||| |||||||||||||| ||||| || | Sbjct 32296 CCGTGCGTTTAACCCAACACAGGCTGAAGAAACATATTCAATGGTTACGGCAAATCGTTT 32355 Query 166874 TTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCT 166933 ||||| || || || ||| | || ||| || || | ||||| || ||||||||| | Sbjct 32356 CTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTT 32415 Query 166934 GTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAA 166993 |||||||| || | ||||| |||| ||| | || || || | ||| | ||| | || Sbjct 32416 ATTTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGCGTTGTAGGTTTAGCTTTAAA 32475 Query 166994 CCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGA 167053 | ||||| ||||| || ||||| |||||| | | || || || |||||||| ||||| Sbjct 32476 TTTACGTGCATATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAATTTGA 32535 Query 167054 AACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTAT 167113 ||| |||||||| || || ||||| || || || ||||| ||| |||||||||| || Sbjct 32536 AACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCA 32595 Query 167114 CGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCT 167173 ||||| |||||||| | | ||||||||||| |||||| | || | || |||||||| Sbjct 32596 AGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCT 32655 Query 167174 CTAA 167177 ||| Sbjct 32656 TTAA 32659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563659672678400