Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq148 720 0.0 >seq148 Length=122497 Score = 720 bits (798), Expect = 0.0 Identities = 757/993 (76%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 169681 TGGCCTCAGTTTACTGATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTC 169740 ||| ||| ||| ||| |||||||| ||||| | ||||| | || | |||||||| Sbjct 78895 TGGGCTCGTTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTT 78836 Query 169741 GGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTT-ATCGTTGCTTTCAT 169799 ||||| || |||||||| ||| ||| | ||| | | || ||| || | || || || Sbjct 78835 GGTGTATTAATGATCCCTACTCTTTTAACTGCAACTTC-TGTTTTCATTATCGCGTTTAT 78777 Query 169800 CGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTA 169859 ||| ||||| ||||| || |||||||| ||| | || |||||| | |||||||| | || Sbjct 78776 CGCGGCTCCTCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATA 78717 Query 169860 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTT 169919 || |||||||||||| |||||||| || |||| | || ||||| |||||| | ||||| Sbjct 78716 CGGAAACAACATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTT 78657 Query 169920 CTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCA 169979 ||| || ||||||||||| ||| || ||||||||||||| || |||||||||||||| || Sbjct 78656 CTACCCAATTTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCA 78597 Query 169980 ATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACT 170039 | | | | | |||||| | | || | | | | ||||||||| | | |||||| | Sbjct 78596 ACTTATCGTTTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATT 78537 Query 170040 ATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGC 170099 ||| | |||||||||||||||||| |||||| || || || || || ||||| | || Sbjct 78536 ATCTTTCCGTTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGC 78477 Query 170100 AGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCC 170159 ||| ||||||||| | | || || ||||||| || |||||||| ||||| ||||| Sbjct 78476 AGCTACAGCTGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCC 78417 Query 170160 TCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCT 170219 | |||||||||||||||| || ||||||||| ||||||||||||| |||||||||||||| Sbjct 78416 TTTAGGTATCTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCT 78357 Query 170220 TATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGC 170279 ||||||||||||||| ||| || || |||||| | || || || || | ||||| || Sbjct 78356 TATGCACCCATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGC 78297 Query 170280 AATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACA 170339 ||||||||||||||||||||| |||||| |||| | || || || || ||||| ||| Sbjct 78296 AATGCACGGTTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGC 78237 Query 170340 GAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGG 170399 ||| | || ||||||||||| |||||||||||||| |||||||| |||||||| ||||| Sbjct 78236 TAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGG 78177 Query 170400 ATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTT 170459 ||||| ||| | | || |||||||||||| || ||||| |||| | ||||| Sbjct 78176 CTACTTCGGTCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTT 78117 Query 170460 CTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAAT 170519 |||| | ||| | | || || || | || ||||| ||| | | ||||||| || || Sbjct 78116 CTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTAT 78057 Query 170520 GGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGT 170579 |||||| ||| | ||||| || ||||||||||| ||| | |||||| | ||| || Sbjct 78056 GGCATTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGT 77997 Query 170580 AGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGA 170639 | | || ||||||||| || | ||| | || ||| ||||||||||||||||||| || Sbjct 77996 AATCAACACTTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGA 77937 Query 170640 GCGTAATGCACACAACTTCCCACTTGACTTGGC 170672 |||||| || |||||||||||| | || || || Sbjct 77936 GCGTAACGCTCACAACTTCCCATTAGATTTAGC 77904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582846834304000