Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq148 740 0.0 >seq148 Length=122497 Score = 740 bits (820), Expect = 0.0 Identities = 753/979 (77%), Gaps = 2/979 (0%) Strand=Plus/Plus Query 83978 ATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACG 84037 ||| || |||||||| || |||||||| |||||||| ||||||||||| | ||||| Sbjct 77909 ATCTAATGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTAGCACG 77968 Query 84038 ATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATT 84097 || | | || ||||| || |||| ||||| ||| ||| |||| || || Sbjct 77969 GTTGATAATGTCTGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTGATTGGTT 78028 Query 84098 GAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAAT 84157 |||||| || ||||| | || |||||||| || || ||| | ||||| |||||||| Sbjct 78029 GAAGTTGAAACCATTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAAT 78088 Query 84158 GCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGC 84217 ||||| |||||||||||||| ||||| ||||| | |||||| |||||||| ||||| Sbjct 78089 ACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAATGAAGC 78148 Query 84218 ATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTC 84277 ||| ||||| || | ||||||||||||||| ||||| ||||| || || |||||||| || Sbjct 78149 ATATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATGTTGTAAGTTTCTTC 78208 Query 84278 TTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAG 84337 |||||||||||| |||||||| | ||| ||| | ||||| |||||||| || |||| Sbjct 78209 TTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGTTTCACGAATTAA 78268 Query 84338 AGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGC 84397 ||||||||| ||||||||||| |||||||||||||||| | ||||| ||||||||||| Sbjct 78269 AGAAGAAGTTACAAGTGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGC 78328 Query 84398 AACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCAT 84457 || || | |||||| || || |||||||| ||||| || || || ||||| || | ||| Sbjct 78329 TACACCAAGCATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAATACGATCAT 78388 Query 84458 GTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAA 84517 | ||||||| || ||||||||||| | ||||| || ||||||||||||||||| |||| Sbjct 78389 GAAGTTGAAAGTACCTGAGATACCTAAAGGCATACCGTCAGAGAAAGAACCTTGACCGAG 78448 Query 84518 AGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGAT 84577 || || | || ||||||||| | || || |||||||| || ||||||||||| ||| Sbjct 78449 TGGGTAGATAATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTAAGCAACTGCGAT 78508 Query 84578 CCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGC 84637 ||||||||||||||| | ||| | || | ||||||||||||||||||||||| | || | Sbjct 78509 CCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTAAGAACATAC 78568 Query 84638 ACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTC 84697 ||| | | ||||||| | || | |||||| ||||| ||||| || |||| ||| || || Sbjct 78569 ACCTAAGAAGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTCATC 78628 Query 84698 CATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAAC 84757 | | ||| ||||||||||| || ||||| |||| ||| ||||| ||||| | |||| Sbjct 78629 TAAAGATGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCGATAGCGTTAGATGTAGGAAT 78688 Query 84758 TACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGAT 84817 | ||||||| ||||||||||||||||| | | ||||||| || ||||||||||| Sbjct 78689 AATTGCACCAGTGATGATGTTGTTTCCGTATAATAATGAACCAGATACAGGCTCACGGAT 78748 Query 84818 ACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATG-AAACAGACAGTGGCAG 84876 ||| || |||||||| || || || | | || || || ||| ||||||| ||| |||| Sbjct 78749 ACCATCGATATCAACAGGAGGAGCCGCGATAAACGCGATAATGAAAACAGA-AGTTGCAG 78807 Query 84877 CAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGG 84936 | ||||| || ||||| | ||||||||||| | || | |||||| | |||| Sbjct 78808 TTAAAAGAGTAGGGATCATTAATACACCAAACCAACCGATGTATAAACGGTTTTCAGTGC 78867 Query 84937 AGGTGACCCAATCACAGAA 84955 || ||||| ||||| || Sbjct 78868 TAGTTACCCACTCACAAAA 78886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571272457452800