Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq148 565 8e-157 >seq148 Length=122497 Score = 565 bits (626), Expect = 8e-157 Identities = 725/995 (73%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| || | |||| ||| | ||||||||||||||| || || |||||||||||||||||| Sbjct 77895 TCAACAACAGCTAAATCTAATGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 77954 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 || | ||| |||||||| | | |||||||||||| | | | ||| || || Sbjct 77955 CCTAAGTTAGCACGGTTGATAATGTCTGCCCAAGTGTTGATTACACGACCTTGTGAATCT 78014 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 || ||||| || |||||||| || || || | || || |||||||| || || || | | Sbjct 78015 ACAACTGATTGGTTGAAGTTGAAACCATTTAAGTTGAATGCCATAGTTGAAATACCTAAA 78074 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425 | || | ||| || | ||| || ||||||| ||| | |||||| ||||| ||| Sbjct 78075 GCAGTGAACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 78134 Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 ||||| || |||||| ||||| || | | || |||||||||||||| ||||| ||| Sbjct 78135 TTGTTGAATGAAGCATATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATG 78194 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTT--CTGAGAAGTAAGCCCAG 5543 || || |||||||| ||||| |||||||| || || | ||| |||| || | || Sbjct 78195 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGTTTTC--AG 78252 Query 5544 TTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTC 5603 | ||||||||||| | |||||||| ||||| || ||||| |||| ||| || | | Sbjct 78253 TAGTTTCACGAATTAAAGAAGAAGTTACAAGTGAACCGTGCATTGCAGAGAATAATGAAC 78312 Query 5604 CACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTG 5663 |||| ||||| ||||| ||||| ||||||||||| || |||||||| || ||||| || | Sbjct 78313 CACCAAATACACCAGCTACACCAAGCATGTGGAATGGGTGCATAAGAATGTTGTGCTCAG 78372 Query 5664 CCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGA 5723 | |||||||||| ||| ||||| |||||||| |||||||| | ||||||||| ||| || Sbjct 78373 CTTGGAATACGATCATGAAGTTGAAAGTACCTGAGATACCTAAAGGCATACCGTCAGAGA 78432 Query 5724 AACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCT 5782 || || || |||| ||||| | | ||||| | ||| ||||| ||||| |||||| Sbjct 78433 AAGAACCTTGACCGAGTGGGTAGATAATGAATACAGCTGTA-GCTGCAGCAACTGGTGCT 78491 Query 5783 GAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGT 5842 || || || || |||||||| ||||| ||||| | | || | |||||||| || Sbjct 78492 GAGTAAGCAACTGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGA 78551 Query 5843 CCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCA 5902 |||| ||||| | ||| | | |||||| | |||| |||||||| || || || Sbjct 78552 CCCATGTAAGAACATACACCTAAGAAGAAGTGACAAACGATAAGTTGGTAAGGACCACCG 78611 Query 5903 TTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATT 5962 ||||| | ||| ||||| | | || |||||||| || || ||||||||||| || || Sbjct 78612 TTGTATAACCACTCATCTAAAGATGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCGATA 78671 Query 5963 GCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCT 6022 ||||| || | || | || || || | |||||||||||||| || | || || || Sbjct 78672 GCGTTAGATGTAGGAATAATTGCACCAGTGATGATGTTGTTTCCGTATAATAATGAACCA 78731 Query 6023 GCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATA 6082 | || || ||||| || || ||||| || || || || || || | || || | || Sbjct 78732 GATACAGGCTCACGGATACCATCGATATCAACAGGAGGAGCCGCGATAAACGCGATAATG 78791 Query 6083 AATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAG 6142 || ||| |||||| ||||| || | || |||||||| ||||||||||| || | || Sbjct 78792 AAAACAGAAGTTGCAGTTAAAAGAGTAGGGATCATTAATACACCAAACCAACCGATGTAT 78851 Query 6143 AGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 | ||||| | |||||||| ||||| ||||| || Sbjct 78852 AAACGGTTTTCAGTGCTAGTTACCCACTCACAAAA 78886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152649309965760