Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq148 625 9e-175 >seq148 Length=122497 Score = 625 bits (692), Expect = 9e-175 Identities = 732/988 (74%), Gaps = 6/988 (1%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 ||||| || | ||||||||||| ||||||||||| ||||| |||||||| ||||||| Sbjct 77904 GCTAAATCTAATGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTA 77963 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | |||||| |||||||| || || | || | ||||| || ||||| Sbjct 77964 GCACGGTTGATAATGTCTGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTGAT 78023 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || |||||||| || || || | || || |||||||| || | || | ||| || | | Sbjct 78024 TGGTTGAAGTTGAAACCATTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAAC 78083 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | | || ||||||||||| | |||||| ||||| ||| || || || Sbjct 78084 CAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAT 78143 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||| ||||| || | | || |||||||||||||| ||||| ||||| || || Sbjct 78144 GAAGCATATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATGTTGTAAGTT 78203 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||||||||| |||||||| || || | ||| ||||| |||| ||||||||| Sbjct 78204 TCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGTTTCACGA 78263 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | || ||||| ||||| |||||||| |||| |||||| | ||||| ||||| Sbjct 78264 ATTAAAGAAGAAGTTACAAGTGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACA 78323 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || ||||| ||||| ||||| || |||||||| || ||||| || || || || || Sbjct 78324 CCAGCTACACCAAGCATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAATACG 78383 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | ||| || |||||||| ||||| ||||| | ||||||||| ||||||||| ||||| Sbjct 78384 ATCATGAAGTTGAAAGTACCTGAGATACCTAAAGGCATACCGTCAGAGAAAGAACCTTGA 78443 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 || | ||||||| | ||||||||| ||||| ||||| || ||||| ||||| || Sbjct 78444 CCGAGTGGGTAGATAATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTAAGCAACT 78503 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 26112 ||||| || | ||| |||| | || | |||||||| || |||| ||||| Sbjct 78504 GCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTAAGAA 78563 Query 26113 GAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCAC 26172 | | || | || ||||| | || |||||||| || || |||||||| || |||||| Sbjct 78564 CATACACCTAAGAAGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCAC 78623 Query 26173 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC 26232 || || | | |||||||||||| |||||||||||||| | |||||| |||||||||| Sbjct 78624 TCATCTAAAGATGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCGATAGCGTTAGATGTA 78683 Query 26233 GGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 26292 || | ||||| || | ||||||||||||||| || | ||||| || || ||||||||| Sbjct 78684 GGAATAATTGCACCAGTGATGATGTTGTTTCCGTATAATAATGAACCAGATACAGGCTCA 78743 Query 26293 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGC---AATTAAAAATGCTGTC 26349 || |||||||| ||||| || ||||| || || | ||| || ||| |||| | || Sbjct 78744 CGGATACCATCGATATCAACAGGAGGAGCCGCGATAAACGCGATAATGAAAACAGAAGT- 78802 Query 26350 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 26409 ||| |||||||| | ||||||||||| ||| |||||||| || | || | ||||| Sbjct 78803 --TGCAGTTAAAAGAGTAGGGATCATTAATACACCAAACCAACCGATGTATAAACGGTTT 78860 Query 26410 TTTGTACTTGTAACCCAGTCACATAAAC 26437 | || || || ||||| ||||| |||| Sbjct 78861 TCAGTGCTAGTTACCCACTCACAAAAAC 78888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151993311212160