Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq148 722 0.0 >seq148 Length=122497 Score = 722 bits (800), Expect = 0.0 Identities = 737/956 (77%), Gaps = 8/956 (1%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCA 162595 |||||||||| ||||| || ||||||||| || || | | ||||||| |||| Sbjct 78846 TCGGTTGGTTTGGTGTATTAATGATCCCTA-CT--CTTTTAACTGCAACTTCTGTTTTCA 78790 Query 162596 TCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAG 162655 | || || || || || || ||||| |||||||||||||||||| | || ||||| | | Sbjct 78789 TTATCGCGTTTATCGCGGCTCCTCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTG 78730 Query 162656 GTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTA 162715 ||||| | | || || |||||||||||| ||||||| | |||||| || || |||| Sbjct 78729 GTTCATTATTATACGGAAACAACATCATCACTGGTGCAATTATTCCTACATCTAACGCTA 78670 Query 162716 TTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATG 162775 | ||| | |||||||| || || |||||||| ||| || | ||||||||||| || || | Sbjct 78669 TCGGTTTACACTTCTACCCAATTTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACG 78610 Query 162776 GTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTC 162835 |||| |||| ||||||| | || | |||||| | | || | | ||| |||| Sbjct 78609 GTGGTCCTTACCAACTTATCGTTTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTC 78550 Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895 || | |||||| | |||| ||| |||||||||||||| |||||| ||||| ||||| | Sbjct 78549 GTGAATGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAG 78490 Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955 ||||||| ||||||| ||||| ||| | |||| || |||||||||||||||||| Sbjct 78489 CACCAGTTGCTGCAGCTACAGCTGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCT 78430 Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015 |||||| |||||| | ||||| || |||||||| |||| |||| |||| |||||||| | Sbjct 78429 CTGACGGTATGCCTTTAGGTATCTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTG 78370 Query 163016 AGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTT 163075 |||||||||| || |||||||| ||||| ||| |||| || || |||||||| ||||||| Sbjct 78369 AGCACAACATTCTTATGCACCCATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTT 78310 Query 163076 CACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTG 163135 || | || ||| ||||||||||| ||||| ||||||||| | || | |||||||||| Sbjct 78309 CATTATTCTCTGCAATGCACGGTTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTG 78250 Query 163136 AGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTG 163195 | | || ||| ||| | ||||| || ||||| ||||||||||| ||||||||||| | Sbjct 78249 AAAACGAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCG 78190 Query 163196 TTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCAC 163255 |||| |||||||| ||||| ||||| || || ||||| ||||| || ||||||||||| | Sbjct 78189 TTGCAGCTCATGGCTACTTCGGTCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTC 78130 Query 163256 GTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGG 163315 ||||| | ||||||||| | ||||| | || || || | || ||||||||||| | | Sbjct 78129 GTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAG 78070 Query 163316 GTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACG 163375 || | |||||||||||||||||| | || |||||||||||||||||||| || || || Sbjct 78069 GTATTTCAACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATT 78010 Query 163376 CAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTT-GGTATG 163434 || ||| || || ||||||||||| || | ||| | || |||| |||||| Sbjct 78009 CACAAGGTCGTGTAATCAACACTTGGGCAGACATTATCAACCGTGCTA-ACTTAGGTATG 77951 Query 163435 GAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 ||||| |||||||||||||| ||||||||||||||| | || | |||| || ||| Sbjct 77950 GAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGATTTAGCTGTTGTTGA 77895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553083693830400