Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq148 731 0.0 >seq148 Length=122497 Score = 731 bits (810), Expect = 0.0 Identities = 760/994 (76%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 162891 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162950 ||| || |||||||||||| || | ||||| | || |||||||||| || ||| | Sbjct 78887 TTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 78828 Query 162951 GATGATTCCAACTCTGTTGGCAGCAACTATCTGTTT-CATCGTCGCCTTCGTCGCTGCTC 163009 ||||| || ||||| || | |||||| ||||||| ||| |||| || |||| |||| Sbjct 78827 AATGATCCCTACTCTTTTAACTGCAACT-TCTGTTTTCATTATCGCGTTTATCGCGGCTC 78769 Query 163010 CCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACA 163069 | ||||| || || || || ||||||||||| || |||||||| | | || || |||| Sbjct 78768 CTCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAACA 78709 Query 163070 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 163129 |||||||| |||||||| || |||| | || ||||| || ||| | |||||||| || | Sbjct 78708 ACATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCAA 78649 Query 163130 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 163189 | |||||||| ||||| | ||||||||| | || ||||||||||||| |||||| | | Sbjct 78648 TTTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCG 78589 Query 163190 TCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATC 163249 | | ||||||| | | || | | | | || ||||| |||||||||||| | || | | Sbjct 78588 TTTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTTCC 78529 Query 163250 GCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCG 163309 | ||||||||||| || |||||| || || ||||| ||||| ||||| ||||| | | Sbjct 78528 GTTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAG 78469 Query 163310 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCA 163369 | || ||| | |||| || |||||||||||||||||||||||| ||||| | || | Sbjct 78468 CTGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 78409 Query 163370 TCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 163429 |||| || || ||||||| |||| | || |||||||| ||||||||||| || ||||||| Sbjct 78408 TCTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCACC 78349 Query 163430 CCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATG 163489 | ||||| ||| | || || |||||||| || ||||| ||| | ||||| |||||||| | Sbjct 78348 CATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 78289 Query 163490 GCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATG 163549 | ||||| || ||||| | | ||||| || ||||||| || ||| ||| | | Sbjct 78288 GTTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGCTAACGAAG 78229 Query 163550 GTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCG 163609 ||||||| || |||||||||||||| || ||||||||||||||||| ||||||||||||| Sbjct 78228 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCG 78169 Query 163610 GTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGG 163669 ||||||| || ||||||||||| |||||||||||| | | ||||||||| | | Sbjct 78168 GTCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 78109 Query 163670 CAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCA 163729 | || ||||| || || || || ||||| ||||| | || | || |||||||||| Sbjct 78108 CTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCA 78049 Query 163730 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACA 163789 || | || ||||||||||||||||| || | | ||| || |||||||| |||||| Sbjct 78048 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACA 77989 Query 163790 CTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 163849 ||||||||||| | | ||||| ||| | ||||||||||| ||||| |||||||||| Sbjct 77988 CTTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACG 77929 Query 163850 CACACAACTTCCCACTCGATCTTGCTGCTGCTGA 163883 | |||||||||||| | ||| | |||| || ||| Sbjct 77928 CTCACAACTTCCCATTAGATTTAGCTGTTGTTGA 77895 Score = 515 bits (570), Expect = 4e-141 Identities = 733/1026 (71%), Gaps = 4/1026 (0%) Strand=Plus/Plus Query 164601 GGGTGGTTCGACATCCTAGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGG 164660 || ||||| || | | |||||||||||| || || || || ||||| || || ||| Sbjct 31637 GGTTGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGG 31696 Query 164661 TCTGGATTACTACTTCTTCCC-ACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCAC 164719 || || ||| || || ||||| || || || || || | || |||||| | || || || Sbjct 31697 TCAGGGTTATTA-TTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAAC 31755 Query 164720 AGCTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAA 164779 | ||||| || |||||| || |||||| | || ||||| ||| | |||||| || Sbjct 31756 TACATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAA 31815 Query 164780 CTTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACT 164839 ||| | ||||| ||||| || || || || || ||||||||| ||| | | | || Sbjct 31816 CTTCTTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCTTTATTATTCCT 31875 Query 164840 TTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAA 164899 |||||||||||| |||| || |||| || ||||| ||| | || || || |||| Sbjct 31876 TTGGGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGAC 31935 Query 164900 TTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCT 164959 || || || || ||||| | || | || |||||||||||||| || |||||||| | Sbjct 31936 ATTTGTTGCCCTTCACGGGTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAAT 31995 Query 164960 GGCACGTCTCA-TTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTG 165018 |||||| ||| | || ||||| || || |||||||| ||||| | ||||||| ||| Sbjct 31996 TGCACGT-TCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTTCTG 32054 Query 165019 TTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGT 165078 | || || || ||| | || || || | || || || |||||||||| ||||| Sbjct 32055 TATTCGTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTCCTA 32114 Query 165079 CCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGA 165138 ||| || || || ||||| || ||||| | || ||| | ||||| ||||||||||||| Sbjct 32115 GCTTCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACTGGA 32174 Query 165139 CCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTG 165198 | | ||||| ||||||||||||||||| || ||| | | || | ||||| || | || Sbjct 32175 CTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTTGTG 32234 Query 165199 CTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCT 165258 | ||||| || | || || ||||| ||| ||| || ||||| || ||||| || | Sbjct 32235 CGATTCACGGTGCAACTGTAGAAAACACACTATTTGAAGATGGTGATGGTGCAAACACAT 32294 Query 165259 TTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCT 165318 | |||||| | | ||||||| ||||| || ||||| ||||| || ||||| || | Sbjct 32295 TCCGTGCGTTTAACCCAACACAGGCTGAAGAAACATATTCAATGGTTACGGCAAATCGTT 32354 Query 165319 TCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGT 165378 ||||||| || || || || | || ||||| ||||| || ||| | || || || |||| Sbjct 32355 TCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGT 32414 Query 165379 TGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCA 165438 | ||||| || || | |||||||||| |||||||| || | ||| | ||| | | Sbjct 32415 TATTTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGCGTTGTAGGTTTAGCTTTAA 32474 Query 165439 ACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTG 165498 | | ||||| || |||||||| || || || | || || |||||||| ||||||| Sbjct 32475 ATTTACGTGCATATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAATTTG 32534 Query 165499 AGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTG 165558 | || ||||| || ||||| || || || || ||||| | ||||||||| |||| || Sbjct 32535 AAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTC 32594 Query 165559 CTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCC 165618 ||||| || |||||||| || | ||||| || || || || || | || ||||| | Sbjct 32595 AAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTC 32654 Query 165619 TTTAAT 165624 |||||| Sbjct 32655 TTTAAT 32660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563208473580800