Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq148 738 0.0 >seq148 Length=122497 Score = 738 bits (818), Expect = 0.0 Identities = 747/972 (77%), Gaps = 0/972 (0%) Strand=Plus/Minus Query 8247 TTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCT 8306 |||||| || ||||| ||| || | || || || || |||| |||||||| || | Sbjct 78887 TTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 78828 Query 8307 CATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCC 8366 |||||||| || ||| | | || || | ||||||| ||| || | || ||||| Sbjct 78827 AATGATCCCTACTCTTTTAACTGCAACTTCTGTTTTCATTATCGCGTTTATCGCGGCTCC 78768 Query 8367 TCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAA 8426 |||||| || ||||| || ||||| || || || |||| || | | ||||| ||||| Sbjct 78767 TCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAACAA 78708 Query 8427 CATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCAT 8486 ||||||| |||||||| || |||| | |||||||| || || | ||||||||||| || Sbjct 78707 CATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCAAT 78648 Query 8487 CTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGT 8546 |||||||| || ||| | ||||||||| | |||||||||||||||||||| ||| | || Sbjct 78647 TTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGT 78588 Query 8547 TTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCG 8606 || |||||| || | || || | | |||| |||||||||||||||||| | |||| ||| Sbjct 78587 TTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTTCCG 78528 Query 8607 CCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGC 8666 | || |||||||| |||||| ||||| ||||| || || ||||| || ||| | || Sbjct 78527 TTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 78468 Query 8667 TGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTAT 8726 ||||||| || |||| || | ||||||||||| |||||||| ||||||||| | ||||| Sbjct 78467 TGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTAT 78408 Query 8727 CTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCC 8786 ||| ||||| ||||||| ||| | || ||||| |||||||||||||| || |||||||| Sbjct 78407 CTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCACCC 78348 Query 8787 CTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGG 8846 ||||||||||||||||| |||||||| || || || || | || || |||||||| || Sbjct 78347 ATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 78288 Query 8847 TTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGG 8906 |||||| || |||||||| | ||||||| || || |||| ||| || ||| | || Sbjct 78287 TTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGCTAACGAAGG 78228 Query 8907 CTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGG 8966 ||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| || Sbjct 78227 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCGG 78168 Query 8967 TCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGC 9026 ||| || || ||||||||||| || || ||||| ||| | || || |||||| | || Sbjct 78167 TCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 78108 Query 9027 TGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAA 9086 ||| ||||| || || || || ||||| || || | || | || || ||||| ||||| Sbjct 78107 TGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAA 78048 Query 9087 CCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACAC 9146 | | ||||| |||||||||||||| || || | || |||||| || || ||||||| Sbjct 78047 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 77988 Query 9147 CTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGC 9206 ||||||||| | | ||||| || | ||||||||||| |||||||| | ||||| Sbjct 77987 TTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGC 77928 Query 9207 ACACAACTTCCC 9218 ||||||||||| Sbjct 77927 TCACAACTTCCC 77916 Score = 495 bits (548), Expect = 4e-135 Identities = 732/1033 (71%), Gaps = 3/1033 (0%) Strand=Plus/Plus Query 9812 TGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCT 9871 |||||||| | |||||||||||||| || || || || ||||| || || ||||| Sbjct 31640 TGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGGTCA 31699 Query 9872 GGACTACTTCTTTTTCCC-ACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTAC 9930 || || || || ||||| || || || |||||| | ||||| ||| | || || ||||| Sbjct 31700 GGGTTA-TTATTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAACTAC 31758 Query 9931 GTTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTT 9990 ||||| || |||||| ||||| || | || | || | || ||| || || Sbjct 31759 ATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAACTT 31818 Query 9991 CCTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 10050 | | ||||| ||||| ||||| || || || ||||||||| ||| | | | ||||| Sbjct 31819 CTTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCTTTATTATTCCTTTG 31878 Query 10051 GGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTT 10110 ||||||||| |||| || ||||| || ||| || | || || || ||| | || Sbjct 31879 GGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGACATT 31938 Query 10111 TGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGC 10170 ||| || || ||||| | || || | || || || ||| | || |||||||| | || Sbjct 31939 TGTTGCCCTTCACGGGTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 31998 Query 10171 GAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTT 10230 | | | | ||| || || || || ||||| || || || | |||||| |||| || Sbjct 31999 ACGTTCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTTCTGTATT 32058 Query 10231 TGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTT 10290 || ||||||| | || ||||| | ||||| ||| ||||||| ||||| || || || Sbjct 32059 CGTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTCCTAGCTT 32118 Query 10291 CGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCT 10350 ||| || || || |||||||| ||| || | ||| |||| ||||| || || ||||| | Sbjct 32119 CGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACTGGACTTT 32178 Query 10351 CAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAAT 10410 || || |||||||||||||| || || ||| |||| || | || | || | || || Sbjct 32179 AAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTTGTGCGAT 32238 Query 10411 CCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAA 10470 ||||| | ||||||||||||||||| | | ||||||| || |||||||| ||| Sbjct 32239 TCACGGTGCAACTGTAGAAAACACACTATTTGAAGATGGTGATGGTGCAAACACATTCCG 32298 Query 10471 AGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTG 10530 || ||| | || || | ||||| || ||||| |||||||| || || |||||||| Sbjct 32299 TGCGTTTAACCCAACACAGGCTGAAGAAACATATTCAATGGTTACGGCAAATCGTTTCTG 32358 Query 10531 GTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTT 10590 ||| || || ||||| | |||||| || ||||| ||| | || ||||||||| | || Sbjct 32359 GTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTTATT 32418 Query 10591 TGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCT 10650 ||| || || | |||||||||| | ||||||| | | ||| | ||| | ||| | Sbjct 32419 TGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGCGTTGTAGGTTTAGCTTTAAATTT 32478 Query 10651 TCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGAC 10710 ||||| || ||||| || || ||||| || | || | ||||||||||||||||| || Sbjct 32479 ACGTGCATATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAATTTGAAAC 32538 Query 10711 GTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGA 10770 |||||||| || ||||| ||| | ||||||||| ||||||| |||||||| | || Sbjct 32539 TTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 32598 Query 10771 CCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACTGTG 10830 || || || |||| |||| ||||| || || ||| | || | || || || || | Sbjct 32599 TCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTA 32658 Query 10831 AT-ATTCCTTAGT 10842 || ||| ||||| Sbjct 32659 ATGGTTCTTTAGT 32671 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 15401 TCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAA 15460 |||||| ||||||||||||||||||| |||| ||||||| ||||| | | ||||||| | Sbjct 11995 TCGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGA 11936 Query 15461 ATCCTGTATTCCCGA 15475 ||||||| |||||| Sbjct 11935 ATCCTGTCATCCCGA 11921 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 15401 TCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTTCAA 15460 |||||| ||||||||||||||||||| |||| ||||||| ||||| | | ||||||| | Sbjct 116480 TCGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGA 116421 Query 15461 ATCCTGTATTCCCGA 15475 ||||||| |||||| Sbjct 116420 ATCCTGTCATCCCGA 116406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516478967040000