Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq148 760 0.0 seq149 95.1 1e-14 >seq148 Length=122497 Score = 760 bits (842), Expect = 0.0 Identities = 766/993 (77%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 |||||| | ||||| || ||||| || ||||| | || | |||||||| || || | Sbjct 78886 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 78827 Query 160936 ATGATTCCCTGCT-TGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| |||| || | | |||| || | |||||| || || || | | ||||| Sbjct 78826 ATGAT-CCCTACTCTTTTAACTGCAACTTCTGTTTTCATTATCGCGTTTATCGCGGCTCC 78768 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 ||||| || ||||| || || ||||| || || ||||||| | | || |||||||| Sbjct 78767 TCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAACAA 78708 Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114 ||||||| ||||||| |||| ||| | ||||||||||||||| | ||||||||||| || Sbjct 78707 CATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCAAT 78648 Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 161174 |||||||| ||| | | || || ||| | |||||||||||||||| |||||| | || Sbjct 78647 TTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGT 78588 Query 161175 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 161234 | |||||| | | || | | | |||||||||||||||| |||||| | |||| ||| Sbjct 78587 TTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTTCCG 78528 Query 161235 TCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 161294 | | || |||||||| ||||| || || ||||| || || || |||||||| | || Sbjct 78527 TTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 78468 Query 161295 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 161354 || ||| | |||| || |||||||||||||||||||||| | |||||| | || || Sbjct 78467 TGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTAT 78408 Query 161355 CTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCC 161414 ||| ||||| ||||||| |||| | || |||||||| |||||||||||||| |||||||| Sbjct 78407 CTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCACCC 78348 Query 161415 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 161474 ||||| ||||| || ||||| ||||| ||||| ||||| | ||| |||||||||||| Sbjct 78347 ATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 78288 Query 161475 TTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGG 161534 ||| || || || ||||| | |||||||||| || |||||||| || ||| | || Sbjct 78287 TTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGCTAACGAAGG 78228 Query 161535 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGG 161594 |||||| ||||||||||||||||| || |||||||||||||| || || || |||||||| Sbjct 78227 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCGG 78168 Query 161595 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGC 161654 |||| | ||||||||||| ||||| ||||||||||| || || | ||||||||| | || Sbjct 78167 TCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 78108 Query 161655 TGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 161714 ||||||||| |||||||| || ||||||||||| | || | || ||||||||||| Sbjct 78107 TGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAA 78048 Query 161715 CCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACAC 161774 | | |||||||||||||||||||| || | || ||| || ||| || |||||||| Sbjct 78047 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 77988 Query 161775 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGC 161834 ||||||||| || ||||||||||| | || |||||||| ||||||||||| || || Sbjct 77987 TTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGC 77928 Query 161835 TCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 161867 |||||||||||| | || | |||| || ||| Sbjct 77927 TCACAACTTCCCATTAGATTTAGCTGTTGTTGA 77895 Score = 661 bits (732), Expect = 0.0 Identities = 763/1024 (75%), Gaps = 10/1024 (1%) Strand=Plus/Plus Query 162111 GGGTGGTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 162170 || ||||||||||| |||| ||||||||| | |||||||||||||| || || ||| Sbjct 31637 GGTTGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGG 31696 Query 162171 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGAC 162229 || || || || || ||||| || || || ||||| || || |||||| | || || || Sbjct 31697 TCAGGG-TTATTATTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAAC 31755 Query 162230 TACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAA 162289 ||| || || || |||||||||||| || | ||| ||| ||| | || ||| || Sbjct 31756 TACATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAA 31815 Query 162290 CTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCT 162349 ||| | || || || || || |||||||| | ||||||||| ||| | | | || Sbjct 31816 CTTCTTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCTTTATTATTCCT 31875 Query 162350 ATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGAC 162409 ||||||||||| ||||||| || || | || ||||| ||| | || || || ||||| Sbjct 31876 TTGGGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGAC 31935 Query 162410 TTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACT 162469 ||||| || || ||||| | ||| | ||||| |||||||||||||| ||||||||| | Sbjct 31936 ATTTGTTGCCCTTCACGGGTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAAT 31995 Query 162470 GGCACGACTTATCGGTA----TTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTG 162525 ||||| || ||| ||||||| || || |||||||||||||||| ||||||| Sbjct 31996 TGCACGT----TCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTT 32051 Query 162526 CTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCAC 162585 ||||||||||| |||||| | || |||||||| |||||||| ||||| || || | Sbjct 32052 CTGTATTCGTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTC 32111 Query 162586 CGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACT 162645 | ||||| || || ||||| ||||||||| | | ||| ||||||| ||||| |||| Sbjct 32112 CTAGCTTCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACT 32171 Query 162646 GGACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCT 162705 |||| |||| ||||| || |||||||| ||||| ||| | ||||||| |||||| || | Sbjct 32172 GGACTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTT 32231 Query 162706 CTGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACA 162765 ||| ||||| || | || || ||||| ||||| | |||||||| || ||||||| Sbjct 32232 GTGCGATTCACGGTGCAACTGTAGAAAACACACTATTTGAAGATGGTGATGGTGCAAACA 32291 Query 162766 CTTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACC 162825 | || || ||| || | ||||||| |||||||| ||||| |||||||| || || | Sbjct 32292 CATTCCGTGCGTTTAACCCAACACAGGCTGAAGAAACATATTCAATGGTTACGGCAAATC 32351 Query 162826 GCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTA 162885 | ||||||||||| ||||| ||| | |||||| ||||| |||||||| || ||||||| Sbjct 32352 GTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTA 32411 Query 162886 TGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTC 162945 || | |||||||| || | ||||| |||| ||| |||| || || | || | ||| Sbjct 32412 TGTTATTTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGCGTTGTAGGTTTAGCTT 32471 Query 162946 TCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGT 163005 | ||| | ||||| || || || || || |||||| |||| || || ||||| ||||| | Sbjct 32472 TAAATTTACGTGCATATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAAT 32531 Query 163006 TTGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCAC 163065 |||| || ||||||||||| || |||||| | || ||||| |||| || ||| | || Sbjct 32532 TTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTG 32591 Query 163066 CAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACG 163125 | || || |||||||| || |||| |||||||| ||||| || ||| | || |||| Sbjct 32592 CTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACG 32651 Query 163126 CTCT 163129 |||| Sbjct 32652 CTCT 32655 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 |||| |||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 11994 CGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGAA 11935 Query 157750 TCCTGTCACCCCGA 157763 |||||||| ||||| Sbjct 11934 TCCTGTCATCCCGA 11921 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 |||| |||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 116479 CGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGAA 116420 Query 157750 TCCTGTCACCCCGA 157763 |||||||| ||||| Sbjct 116419 TCCTGTCATCCCGA 116406 >seq149 Length=72121 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 157692 GGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAATC 157751 ||||||||||||| |||||||||| ||||||||||||||| | |||| ||||||||||| Sbjct 6438 GGGTGTAGCGCAGTCTGGTAGCGCGCTTGCTTTGGGAGCAAGATGTCGTAGGTTCGAATC 6497 Query 157752 CTGTCACCCCGACTT 157766 || |||||| || || Sbjct 6498 CTATCACCCTGATTT 6512 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 157692 GGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAATC 157751 ||||||||||||| |||||||||| ||||||||||||||| | |||| ||||||||||| Sbjct 63069 GGGTGTAGCGCAGTCTGGTAGCGCGCTTGCTTTGGGAGCAAGATGTCGTAGGTTCGAATC 63128 Query 157752 CTGTCACCCCGACTT 157766 || |||||| || || Sbjct 63129 CTATCACCCTGATTT 63143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547746104505600