Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq148 583 3e-162 >seq148 Length=122497 Score = 583 bits (646), Expect = 3e-162 Identities = 721/986 (73%), Gaps = 0/986 (0%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||||||||| |||||||| ||||| |||||||||||||| ||||| | || | ||| Sbjct 77903 AGCTAAATCTAATGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTT 77962 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||||| | ||| ||||| || | || | ||| | |||||| || Sbjct 77963 AGCACGGTTGATAATGTCTGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTGA 78022 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||||||||| ||||| | || || |||||||| || || || | || || | Sbjct 78023 TTGGTTGAAGTTGAAACCATTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAA 78082 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | | || ||||||||||| |||||||| |||| | ||||| || Sbjct 78083 CCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAA 78142 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||| ||||| || | | || |||||||||||||| ||||| || || || || Sbjct 78143 TGAAGCATATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATGTTGTAAGT 78202 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||||||||| || ||||| || || | ||| || || ||||| ||||| | Sbjct 78203 TTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGTTTCACG 78262 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 ||| | || ||||| ||||| |||||||| |||| |||||| | ||||| ||||| Sbjct 78263 AATTAAAGAAGAAGTTACAAGTGAACCGTGCATTGCAGAGAATAATGAACCACCAAATAC 78322 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || ||||| ||||| ||||| || |||||||| || ||||| || ||||||||||| Sbjct 78323 ACCAGCTACACCAAGCATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAATAC 78382 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 || |||||| ||||||||||| ||||| | ||||||||| ||||||||| ||||| Sbjct 78383 GATCATGAAGTTGAAAGTACCTGAGATACCTAAAGGCATACCGTCAGAGAAAGAACCTTG 78442 Query 18374 TCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAAC 18433 || | || || | | ||||| | || || || |||||||| || |||||||| Sbjct 78443 ACCGAGTGGGTAGATAATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTAAGCAAC 78502 Query 18434 ACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGC 18493 ||||| || |||||||||| | || | |||||||| || |||||||||| Sbjct 78503 TGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTAAGA 78562 Query 18494 TGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCA 18553 | || | || ||||| | || || ||||| || || || ||||| |||||||| Sbjct 78563 ACATACACCTAAGAAGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCA 78622 Query 18554 CTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGA 18613 ||| || | | |||||||||||| |||||||||||||| | |||||| |||||||||| Sbjct 78623 CTCATCTAAAGATGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCGATAGCGTTAGATGT 78682 Query 18614 CGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTC 18673 || | ||||| || | |||||||||||||| || | ||| | || || |||||||| Sbjct 78683 AGGAATAATTGCACCAGTGATGATGTTGTTTCCGTATAATAATGAACCAGATACAGGCTC 78742 Query 18674 ACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGC 18733 ||| |||||||| || ||||| |||||||| || | ||| || || | || | | || Sbjct 78743 ACGGATACCATCGATATCAACAGGAGGAGCCGCGATAAACGCGATAATGAAAACAGAAGT 78802 Query 18734 TGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTT 18793 ||| |||||||| | ||||||||| | ||| |||||||| || | ||| | ||||| | Sbjct 78803 TGCAGTTAAAAGAGTAGGGATCATTAATACACCAAACCAACCGATGTATAAACGGTTTTC 78862 Query 18794 TGTACTCGTAACCCAGTCACATAAAC 18819 || || || ||||| ||||| |||| Sbjct 78863 AGTGCTAGTTACCCACTCACAAAAAC 78888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151318112495040