Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq148 668 0.0 >seq148 Length=122497 Score = 668 bits (740), Expect = 0.0 Identities = 727/972 (75%), Gaps = 2/972 (0%) Strand=Plus/Plus Query 103187 GGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACCAGCGCGGTTGAGA 103246 ||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||| | Sbjct 77916 GGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTAGCACGGTTGATA 77975 Query 103247 ACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGACTGGTTGAAGTTG 103306 | ||||||||| ||||| | |||||||| || ||| | | || |||||||||||| Sbjct 77976 ATGTCTGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTGATTGGTTGAAGTTG 78035 Query 103307 AATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGATACCCACT 103366 || || || | |||||| ||||| || || ||| | || |||||||| ||||| || Sbjct 78036 AAACCATTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCAACA 78095 Query 103367 ACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAATGATGCGTATTGG 103426 ||||| | |||||||||||||| || |||||| Sbjct 78096 ACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAATGAAGCATATTGG 78155 Query 103427 AAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGT 103486 || || |||||||||||||| |||||||| || ||||||||||| || ||||| ||||| Sbjct 78156 AAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATGTTGTAAGTTTCTTCTTCTTGA 78215 Query 103487 CCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCACGAACCAGCGAGGAC 103546 ||||| |||||||| | ||| ||||| ||||||| || ||||||| | || || Sbjct 78216 CCGAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGTTTCACGAATTAAAGAAGAA 78275 Query 103547 GTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCC 103606 || ||||| ||||||||||| ||| ||| | ||||||||| || || ||||| || || Sbjct 78276 GTTACAAGTGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACACCAGCTACACCA 78335 Query 103607 AGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTG 103666 ||||||||||| |||||||| |||||||| || || |||||||| || | |||| ||||| Sbjct 78336 AGCATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTG 78395 Query 103667 AAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAG 103726 || || || || ||||| ||||||||| | || ||||| ||||||||||| | |||||| Sbjct 78396 AAAGTACCTGAGATACCTAAAGGCATACCGTCAGAGAAAGAACCTTGACCGAGTGGGTAG 78455 Query 103727 ACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGG 103786 | | |||||| || | || || ||||| || || ||||| || || |||||| || Sbjct 78456 ATAATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTAAGCAACTGCGATCCATGGA 78515 Query 103787 CGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATGCCAATG 103846 ||||| || | |||| | || |||||||| ||||| ||||| || | | | | || | | Sbjct 78516 CGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTAAGAACATACACCTAAG 78575 Query 103847 AGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGAT 103906 | |||||| | || | ||||||| ||||||||||||| || | ||||||||| | |||| Sbjct 78576 AAGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGAT 78635 Query 103907 GCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCA 103966 || ||||||||||| || |||||||| | ||| || ||||| || | |||| || |||| Sbjct 78636 GCAGCTTCCCAAATTGGGTAGAAGTGTAAACCGATAGCGTTAGATGTAGGAATAATTGCA 78695 Query 103967 CCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCG 104026 |||| |||||||||||| ||||| | | |||||||| || || ||||| || || ||| Sbjct 78696 CCAGTGATGATGTTGTTTCCGTATAATAATGAACCAGATACAGGCTCACGGATACCATCG 78755 Query 104027 ATATCGACGGGAGGTGCTGCTACGAAAGCAACGATG-AAGCAGATGGTTGCCGCCAACAG 104085 ||||| || ||||| || || | || || | ||| || |||| ||||| | || || Sbjct 78756 ATATCAACAGGAGGAGCCGCGATAAACGCGATAATGAAAACAGA-AGTTGCAGTTAAAAG 78814 Query 104086 AGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTGTCGATGTAAC 104145 ||| |||||||| | ||||| |||||||| | || | |||||| | || || || Sbjct 78815 AGTAGGGATCATTAATACACCAAACCAACCGATGTATAAACGGTTTTCAGTGCTAGTTAC 78874 Query 104146 CCACTCGCAGAA 104157 |||||| || || Sbjct 78875 CCACTCACAAAA 78886 Score = 542 bits (600), Expect = 4e-149 Identities = 732/1017 (72%), Gaps = 2/1017 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| || ||||| ||||| ||||||| |||||||| || ||||| Sbjct 32655 AGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACAAGTTTTTCATGAGGCTGATCT 32596 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||| || || || || || ||||| ||||| || Sbjct 32595 TGAGCAGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTTGTATAGAAAGTT 32536 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| || || | || ||||| || || || ||||| ||||| | Sbjct 32535 TCAAATTCAGGATCTTCCGCAGCGCGAATTTCTTGTGAAACGAAATCATATGCACGTAAA 32476 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | ||| | ||| | || || || | ||| |||| ||||| | || |||||||| Sbjct 32475 TTTAAAGCTAAACCTACAACGCCAATAGCACTCATCCAAAGACCAGTTACTGGAACAAAT 32416 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | ||||||||| || ||||| | || || ||| || | |||||| ||||| |||||| Sbjct 32415 AACATAAAGAAGTGTAACCAACGTTTGTTTGAAAAAGCTACACCAAAAATTTGTGACCAG 32356 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 ||||| ||||| |||||||||||||| || ||||| | ||||| | | || || | Sbjct 32355 AAACGATTTGCCGTAACCATTGAATATGTTTCTTCAGCCTGTGTTGGGTTAAACGCACGG 32296 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || |||||||| ||||||||||||| | || ||||| || ||||| ||||||| || Sbjct 32295 AATGTGTTTGCACCATCACCATCTTCAAATAGTGTGTTTTCTACAGTTGCACCGTGAATC 32236 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | || | ||| | || || | ||| || ||||||||||||||||| ||||| | Sbjct 32235 GCACAAAGTAATGCAGCACCAAGTACACCCGCTACACCCATCATATGGAAAGGGTTTAAA 32176 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 |||||||| |||||||| || | ||| | | ||||| || || || || ||||| || Sbjct 32175 GTCCAGTTGTGGAAGCCTTGGAAGAATAAAATGAATCGGAAAATTGCAGCTACACCGAAG 32116 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 || ||||| ||||||| || ||||| | |||||| || | || ||| || || Sbjct 32115 CTAGGAGCAAAAAACCAACCAGATTGTCCTAAAGGATAAATTAAGAAAACAGAAACGAAT 32056 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 |||| ||||| | ||||| |||||||| || || ||||||||| | | | | || Sbjct 32055 ACAGAAATAGGAGCTGAGAAAGCAATAGCGTTATATGGACGAATTTTTACTGAACGTGCA 31996 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || || |||||||||||||||||||| || | ||| | ||||| || || ||||| Sbjct 31995 ATTTCAAACTGACGAAGCATGAAACCAATAAGAGAAAAAGACCCGTGAAGGGCAACAAAT 31936 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || || | ||| ||| | ||||| ||||||||||||||||||||| Sbjct 31935 GTCCAAAGACCACCTAATTGACACCAACGAGTAAAATCACCTTGAGCTTCAGGACCCCAA 31876 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 || | | | ||| ||||||||| | || || ||||| ||||||||||| | ||| Sbjct 31875 AGGAATAATAAAGAGTGACCCATACTATTCGCTGGAGTTGATACAGCAGCTGTTAAGAAG 31816 Query 102550 TTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGTC 102609 || |||||| | || |||||| | || || |||||||| || || |||| || Sbjct 31815 TTGCAACCTTCTAAATATGAAGACGCTAAACCATGAGTATACCAAGATGTTACAAATGTA 31756 Query 102610 GTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGT-GGGAAAAAGAAGTAGTCCAGA 102668 || || || | ||| || || | ||| || || || || ||||| || || || || || Sbjct 31755 GTTCCTGTGAACCAACCACCTAGTGCAAGGTATGCTGTAGGGAATAATAA-TAACCCTGA 31697 Query 102669 CCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAACCA 102725 ||| || || || || || || || || || ||||||||| | | |||||||| Sbjct 31696 CCATCCTACGAAAACGAAACGGTCACGACGAAGCCAGTCATCAACAACATCAAACCA 31640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633512332972800