Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq148 681 0.0 >seq148 Length=122497 Score = 681 bits (754), Expect = 0.0 Identities = 743/984 (76%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 |||| |||| |||||||||||| || || | || ||||| ||||||||||| ||||| Sbjct 77904 GCTAAATCTAATGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAAGTTA 77963 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | ||| | || || |||| || || | || | | ||| ||||||||| Sbjct 77964 GCACGGTTGATAATGTCTGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTGAT 78023 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| |||||||||||||| |||||||||||||| || | ||||| | || || ||| Sbjct 78024 TGGTTGAAGTTGAAACCATTTAAGTTGAATGCCATAGTTGAAATACCTAAAGCAGTGAAC 78083 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288 || | || ||||| || || | |||| ||||||||| | | |||||||||||| Sbjct 78084 CAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAT 78143 Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348 |||||||| ||||| || | |||||| ||||| || || ||||| || |||||||| ||| Sbjct 78144 GAAGCATATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATGTTGTAAGTT 78203 Query 124349 TCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTG 124408 ||||||||||| ||||| || ||||| | ||| ||| || | || || ||||| | Sbjct 78204 TCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTAGTTTCACGA 78263 Query 124409 ATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATT 124468 |||| |||||| || ||||| ||||| |||||||| |||||||| || || || || | Sbjct 78264 ATTAAAGAAGAAGTTACAAGTGAACCGTGCATTGCAGAGAATAATGAACCACCAAATACA 78323 Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528 || ||||| || ||||||||| || ||||| |||||||| ||||| |||||||| ||| Sbjct 78324 CCAGCTACACCAAGCATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCTTGGAATACG 78383 Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588 | ||| ||||||||||||||||||||||| | |||||||| |||||||| ||||| ||| Sbjct 78384 ATCATGAAGTTGAAAGTACCTGAGATACCTAAAGGCATACCGTCAGAGAAAGAACCTTGA 78443 Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648 || | |||||| | | ||||||||| || |||| ||||||||||| |||||||| Sbjct 78444 CCGAGTGGGTAGATAATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAGTAAGCAACT 78503 Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708 |||||| |||||||| ||||| | | | |||| |||||| | | |||||||| | Sbjct 78504 GCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTAAGAA 78563 Query 124709 GAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCAT 124768 | | ||| | | |||||| ||| | | || ||||||||||| || || ||||| Sbjct 78564 CATACACCTAAGAAGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTGTATAACCAC 78623 Query 124769 TCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGAT 124828 ||||| | || ||| |||||||| |||||||||||||||| ||||||||||| |||| Sbjct 78624 TCATCTAAAGATGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCGATAGCGTTAGATGTA 78683 Query 124829 GGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCT 124888 |||| || |||||||| |||||||||||| || ||||| || ||||| | ||| || || Sbjct 78684 GGAATAATTGCACCAGTGATGATGTTGTTTCCGTATAATAATGAACCAGATACAGGCTCA 78743 Query 124889 CTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAAACATGCTGCT 124948 | ||| || |||||||| |||||||| || || ||||| || | |||||| | | | Sbjct 78744 CGGATACCATCGATATCAACAGGAGGAGCCGCGATAAACGCGATAATGAAAACAGAAGTT 78803 Query 124949 GCTGTGAGTA-AGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGTT 125007 || || | | || | || ||||||| |||||||||||||| | || | | ||| | Sbjct 78804 GCAGTTAAAAGAGTA-GGGATCATTAATACACCAAACCAACCGATGTATAAACGGTTTTC 78862 Query 125008 TGTTGATGTTACCCACTCACAGAA 125031 || |||||||||||||| || Sbjct 78863 AGTGCTAGTTACCCACTCACAAAA 78886 Score = 444 bits (492), Expect = 7e-120 Identities = 726/1045 (69%), Gaps = 23/1045 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | |||||| || || || |||||||||| || ||||| || || Sbjct 32659 TTAAAGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACAAGTTTTTCATGAGGCTG 32600 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | |||||| || || |||||||| Sbjct 32599 ATCTTGAGCAGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTTGTATAGAA 32540 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 ||| || || || || ||||| || || | || ||||| || || || || ||||| | Sbjct 32539 AGTTTCAAATTCAGGATCTTCCGCAGCGCGAATTTCTTGTGAAACGAAATCATATGCACG 32480 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 | || | |||| |||||| | || |||| |||| | ||| | || ||||| Sbjct 32479 TAAATTTAAAGCTAAACCTACAACGCCAATAGCACTCATCCAAAGACCAGTTACTGGAAC 32420 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||||||||| | | |||||| ||||| || | |||||| || ||||| Sbjct 32419 AAATAACATAAAGAAGTGTAACCAACGTTTGTTTGAAAAAGCTACACCAAAAATTTGTGA 32360 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 |||||| | || || |||| ||| ||| |||||||| ||||||| || | || || Sbjct 32359 CCAGAAACGATTTGCCGTAACCATTGAATATGTTTCTTCAGCCTGTGTTGGGTTAAACGC 32300 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| || | ||| | || ||| || ||||| | | ||| Sbjct 32299 ACGGAATGT----GTTTGCA-----CCATCACCAT------------CTTCAAATAGTGT 32261 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 ||| | || |||||||| ||||| ||||| |||||||| |||| |||| || || || Sbjct 32260 GTTTTCTACAGTTGCACCGTGAATCGCACAAAGTAATGCAGCACCAAGTACACCCGCTAC 32201 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 ||||||||| || || || || || || ||||||||| ||||| | |||||| || | Sbjct 32200 ACCCATCATATGGAAAGGGTTTAAAGTCCAGTTGTGGAAGCCTTGGAAGAATAAAATGAA 32141 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 || || ||||| || |||||||| || || || ||||||| || |||| || Sbjct 32140 TCGGAAAATTGCAGCTACACCGAAGCTAGGAGCAAAAAACCAACCAGATTGTCCTAAAGG 32081 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || | || | | ||| || | ||| ||| ||||| || | ||||| || Sbjct 32080 ATAAATTAAGAAAACAGAAACGAATACAGAAATAGGAGCTGAGAAAGCAATAGCGTTATA 32021 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 || | ||| ||| | ||| || ||||| || | ||||||||||| || || Sbjct 32020 TGGACGAATTTTTACTGAACGTGCAATTTCAAACTGACGAAGCATGAAACCAATAAGAGA 31961 Query 123586 AAA-GACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGA 123644 ||| ||| || || | || ||||| |||| ||||| || | ||| |||||||| | Sbjct 31960 AAAAGAC-CCGTGAAGGGCAACAAATGTCCAAAGACCACCTAATTGACACCAACGAGTAA 31902 Query 123645 ATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAG 123704 | ||||| |||||||| ||||||||||| | | | |||||||| | | | Sbjct 31901 AATCACCTTGAGCTTCAGGACCCCAAAGGAATAATAAAGAGTGACCCATACTATTCGCTG 31842 Query 123705 GTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCAT 123764 | || || || || |||||||||||||| || || | ||||||||| || | ||||| Sbjct 31841 GAGTTGATACAGCAGCTGTTAAGAAGTTGCAACCTTCTAAATATGAAGACGCTAAACCAT 31782 Query 123765 GTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACG 123824 | |||||||| ||||| || || ||||||||| |||||||||||| | || || || | Sbjct 31781 GAGTATACCAAGATGTTACAAATGTAGTTCCTGTGAACCAACCACCTAGTGCAAGGTATG 31722 Query 123825 CACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACC 123884 | ||| | | ||| | || |||||||||| ||| || ||||| || | | || Sbjct 31721 CTGTAGGGAATAATAATAACCCTGACCATCCTACGAAAACGAAACGGTCACGACGAAGCC 31662 Query 123885 AGTCGTCAAGAACATCAAACCAACC 123909 |||| |||| ||||||||||||||| Sbjct 31661 AGTCATCAACAACATCAAACCAACC 31637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578997242003200