Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq148 798 0.0 >seq148 Length=122497 Score = 798 bits (884), Expect = 0.0 Identities = 775/994 (78%), Gaps = 2/994 (0%) Strand=Plus/Plus Query 26725 TCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAAT 26784 ||| || |||| | ||| ||||| || || || ||||| | ||||| || || || | Sbjct 77895 TCAACAACAGCTAAATCTAATGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 77954 Query 26785 CCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCA 26844 || | ||||||||||| || ||||||||||||||||| |||||||| |||||||| Sbjct 77955 CCTAAGTTAGCACGGTTGATAATGTCTGCCCAAGTGTTGATTACACGACCTTGTGAATCT 78014 Query 26845 ATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGT 26904 | || || || |||||||||||||| || | ||||| ||||| || || | ||| | Sbjct 78015 ACAACTGATTGGTTGAAGTTGAAACCATTTAAGTTGAATGCCATAGTTGAAATACCTAAA 78074 Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAG 26964 || |||||||| || |||||||| ||||| ||||| | ||||||||| || ||||| ||| Sbjct 78075 GCAGTGAACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAG 78134 Query 26965 TTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG 27024 ||||||||||||||||||||||| || |||||||||||||||||||| ||||| |||||| Sbjct 78135 TTGTTGAATGAAGCATATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATG 78194 Query 27025 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTC 27084 ||||| || ||||||||||||||||| || ||||| | ||| ||| || ||||||| Sbjct 78195 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGTTTTCAGTA 78254 Query 27085 GTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCA 27144 || ||||| | | ||||| || || || |||||||| |||||||| | || ||| Sbjct 78255 GTTTCACGAATTAAAGAAGAAGTTACAAGTGAACCGTGCATTGCAGAGAATAATGAACCA 78314 Query 27145 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCC 27204 || ||||| ||||| ||||| ||||||||||| ||||||||||| || ||||| || || Sbjct 78315 CCAAATACACCAGCTACACCAAGCATGTGGAATGGGTGCATAAGAATGTTGTGCTCAGCT 78374 Query 27205 TGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAA 27264 |||||||| | |||| |||| |||||||| |||||||| | ||||||| | || |||||| Sbjct 78375 TGGAATACGATCATGAAGTTGAAAGTACCTGAGATACCTAAAGGCATACCGTCAGAGAAA 78434 Query 27265 GAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAA 27324 ||||||||||||| || |||| | |||||| || | || ||||| ||||| || || Sbjct 78435 GAACCTTGACCGAGTGGGTAGATAATGAATACAGCTGTAGCTGCAGCAACTGGTGCTGAG 78494 Query 27325 TATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCC 27384 || || || |||||||||||||||||||||||| | || | |||||| ||||| ||| Sbjct 78495 TAAGCAACTGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCC 78554 Query 27385 ATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTA 27444 || |||| | | | || | | |||||| | || | |||||| ||||||||||||| Sbjct 78555 ATGTAAGAACATACACCTAAGAAGAAGTGACAAACGATAAGTTGGTAAGGACCACCGTTG 78614 Query 27445 TACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCA 27504 || ||||||||||| | ||||| |||||||| |||||||||||||| | |||||| || Sbjct 78615 TATAACCACTCATCTAAAGATGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCGATAGCG 78674 Query 27505 TTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCA 27564 || || | || | || |||||||| ||||||||||| || || | | |||||||| Sbjct 78675 TTAGATGTAGGAATAATTGCACCAGTGATGATGTTGTTTCCGTATAATAATGAACCAGAT 78734 Query 27565 ACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATG-AA 27623 || || ||||| ||||| || ||||| || || || || ||||| || |||| |||| || Sbjct 78735 ACAGGCTCACGGATACCATCGATATCAACAGGAGGAGCCGCGATAAACGCGATAATGAAA 78794 Query 27624 GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAA 27683 |||| |||||| | ||| || || |||||||| | |||||| |||||||| | || || Sbjct 78795 ACAGA-AGTTGCAGTTAAAAGAGTAGGGATCATTAATACACCAAACCAACCGATGTATAA 78853 Query 27684 ACGGTTGTTAGTTGATGTCACCCACTCACAGAAA 27717 |||||| | ||| || ||||||||||| ||| Sbjct 78854 ACGGTTTTCAGTGCTAGTTACCCACTCACAAAAA 78887 Score = 524 bits (580), Expect = 1e-143 Identities = 689/952 (72%), Gaps = 2/952 (0%) Strand=Plus/Minus Query 23459 CATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGAAGGTCTCATACGA 23518 |||||| |||| | || | ||| || | ||||||||| || ||||| || ||| | Sbjct 32587 CATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTTGTATAGAAAGTTTCAAATTC 32528 Query 23519 ACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCACGAAGATTAAGAGC 23578 | |||||| ||||| ||||| ||||| || |||||||| ||||| | ||| | ||| Sbjct 32527 AGGATCTTCCGCAGCGCGAATTTCTTGTGAAACGAAATCATATGCACGTAAATTTAAAGC 32468 Query 23579 AAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAACAAACAACATAAA 23638 | || | | |||||||| | | ||||||||| | || |||||||| |||||||| Sbjct 32467 TAAACCTACAACGCCAATAGCACTCATCCAAAGACCAGTTACTGGAACAAATAACATAAA 32408 Query 23639 GAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGATT 23698 |||||| |||||||| || || ||| || || || || ||||||||||| |||||||| Sbjct 32407 GAAGTGTAACCAACGTTTGTTTGAAAAAGCTACACCAAAAATTTGTGACCAGAAACGATT 32348 Query 23699 TGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTT 23758 ||| |||||||| ||||| || || || |||| || | | ||||| || ||||| Sbjct 32347 TGCCGTAACCATTGAATATGTTTCTTCAGCCTGTGTTGGGTTAAACGCACGGAATGTGTT 32288 Query 23759 TGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAG 23818 ||| || ||||||||| | ||||| || || ||||| | || ||||| ||| | || Sbjct 32287 TGCACCATCACCATCTTCAAATAGTGTGTTTTCTACAGTTGCACCGTGAATCGCACAAAG 32228 Query 23819 AAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTT 23878 | ||| | || |||| ||| || || |||||||||||||| ||||| | |||||||| Sbjct 32227 TAATGCAGCACCAAGTACACCCGCTACACCCATCATATGGAAAGGGTTTAAAGTCCAGTT 32168 Query 23879 ATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGC 23938 || ||||| |||| ||| | || ||| | |||||| || || |||||||| || || || Sbjct 32167 GTGGAAGCCTTGGAAGAATAAAATGAATCGGAAAATTGCAGCTACACCGAAGCTAGGAGC 32108 Query 23939 AAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAAT 23998 ||| |||||| || ||||| |||||||| || | ||| ||||| |||||||||| ||| Sbjct 32107 AAAAAACCAACCAGATTGTCCTAAAGGATAAATTAAGAAAACAGAAACGAATACAGAAAT 32048 Query 23999 AGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGACGTGCCAGTTCAAA 24058 |||| | || |||||||| || || || ||||| ||| | | |||||| | |||||| Sbjct 32047 AGGAGCTGAGAAAGCAATAGCGTTATATGGACGAATTTTTACTGAACGTGCAATTTCAAA 31988 Query 24059 CTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAAG 24118 |||||| | ||| ||||| ||||| | ||| | ||||| || |||||||| | |||||| Sbjct 31987 CTGACGAAGCATGAAACCAATAAGAGAAAAAGACCCGTGAAGGGCAACAAATGTCCAAAG 31928 Query 24119 CCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAAG 24178 || || | ||| ||| || ||| || ||||||| |||||||||||||| | | Sbjct 31927 ACCACCTAATTGACACCAACGAGTAAAATCACCTTGAGCTTCAGGACCCCAAAGGAATAA 31868 Query 24179 AAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCGTAAGAAAGTTAGCACC 24238 | ||| ||||||||| | || || || || ||||| || || | ||||| ||| Sbjct 31867 TAAAGAGTGACCCATACTATTCGCTGGAGTTGATACAGCAGCTGTTAAGAAGTTGCAACC 31808 Query 24239 CTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGT 24298 || | ||| ||| || | ||||| || |||||| || ||||| | || || || Sbjct 31807 TTCTAAATATGAAGACGCTAAACCATGAGTATACCAAGATGTTACAAATGTAGTTCCTGT 31748 Query 24299 AAGCCAACCGCCAATGGCAAGATAAGCAGT-GGGAAGAAGTAGGAGTCCAGACCAACCCA 24357 | |||||| || | ||||| || || || ||||| || || | || ||||| || | Sbjct 31747 GAACCAACCACCTAGTGCAAGGTATGCTGTAGGGAATAA-TAATAACCCTGACCATCCTA 31689 Query 24358 CAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAACCATCC 24409 | || || || || || || || |||||| || | | |||||||| || Sbjct 31688 CGAAAACGAAACGGTCACGACGAAGCCAGTCATCAACAACATCAAACCAACC 31637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665493069011200