Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq148 756 0.0 >seq148 Length=122497 Score = 756 bits (838), Expect = 0.0 Identities = 765/993 (77%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 165769 TTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTG 165828 || || || ||||| || ||||| | |||||| | || |||||||||||||| | Sbjct 78886 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 78827 Query 165829 ATGATTCCAACTCTGTTGGCAGCAACTATCTGCTT-CATCGTCGCCTTCATCGCTGCTCC 165887 ||||| || ||||| || | |||||| |||| || ||| |||| || ||||| ||||| Sbjct 78826 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTTTTCATTATCGCGTTTATCGCGGCTCC 78768 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 ||||| || ||||| || |||||||| || || ||||||| | | || || ||||| Sbjct 78767 TCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAACAA 78708 Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007 ||||||| |||||||| || |||| | || ||||| || ||| |||||||||| || || Sbjct 78707 CATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCAAT 78648 Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067 |||||||| ||||| | || || ||| | || ||||||||||||| |||||| | || Sbjct 78647 TTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGT 78588 Query 166068 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 166127 | |||||| | | || | | | | |||||||||||||| |||||| | |||| ||| Sbjct 78587 TTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTTCCG 78528 Query 166128 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGC 166187 | |||||||||||||||||||| |||||||||||||||||||| ||||| || | || Sbjct 78527 TTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 78468 Query 166188 AGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 166247 |||||| | | || || ||||||||||| ||||||||| | ||||| | || || Sbjct 78467 TGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTAT 78408 Query 166248 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 166307 |||||| || ||||||| |||| | || ||||||||||||||||| ||||| ||||| || Sbjct 78407 CTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCACCC 78348 Query 166308 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 166367 ||||| ||||| || || ||||| ||||||||||| || || ||| |||||||| Sbjct 78347 ATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 78288 Query 166368 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 166427 | || ||||||||| | || | || || ||||||| |||||| ||| | || Sbjct 78287 TTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGCTAACGAAGG 78228 Query 166428 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 166487 |||||| ||||| |||||||||||||| ||||||||||| || |||||||| |||||||| Sbjct 78227 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCGG 78168 Query 166488 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 166547 |||||| || |||||||| ||||||||||||||||| || || || ||||||||| | || Sbjct 78167 TCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 78108 Query 166548 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 166607 ||| ||||| ||||| || || |||||||| || | || | || || ||||||||||| Sbjct 78107 TGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAA 78048 Query 166608 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 166667 | | || ||||||||||||||||| || | | ||| || |||||||| | ||||| Sbjct 78047 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 77988 Query 166668 CTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGC 166727 |||||||| || | ||||| ||| | ||||||||||| ||||| ||||||||||| Sbjct 77987 TTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGC 77928 Query 166728 ACACAACTTCCCCCTCGACCTCGCTGCTGCTGA 166760 ||||||||||| | || | |||| || ||| Sbjct 77927 TCACAACTTCCCATTAGATTTAGCTGTTGTTGA 77895 Score = 600 bits (664), Expect = 1e-166 Identities = 749/1024 (73%), Gaps = 2/1024 (0%) Strand=Plus/Plus Query 167008 GGGTGGTTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGG 167067 || ||||||||||| | |||||||||||| | || ||||| ||||| || || ||| Sbjct 31637 GGTTGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGG 31696 Query 167068 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGAC 167126 || || || || || ||||| || || || ||||| | || |||||| | || || || Sbjct 31697 TCAGGG-TTATTATTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAAC 31755 Query 167127 TACTTTCGTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTTATCTTGAGGGTGCGAA 167186 ||| || || || ||||||||||||||| | ||||| ||| | || ||| || Sbjct 31756 TACATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAA 31815 Query 167187 CTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCT 167246 ||| | || || || || |||||||| || ||||||||| |||||| | | || Sbjct 31816 CTTCTTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCTTTATTATTCCT 31875 Query 167247 ATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGC 167306 |||||||||||| ||||||| ||||| | ||| ||| | || || || ||| | Sbjct 31876 TTGGGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGAC 31935 Query 167307 TTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACT 167366 ||||| || || ||||| | ||| |||| ||||||||||||||||| ||||||||| | Sbjct 31936 ATTTGTTGCCCTTCACGGGTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAAT 31995 Query 167367 TGCTCGCCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGT 167426 ||| || | || ||||| || || |||||||||||||| | ||||||| |||| Sbjct 31996 TGCACGTTCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTTCTGT 32055 Query 167427 CTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTC 167486 |||||| |||||| | | ||||| | || ||| | ||||| ||||| || Sbjct 32056 ATTCGTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTCCTAG 32115 Query 167487 CTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGAC 167546 |||||| || || || || ||||||||| | | ||| ||||||| |||||||||||||| Sbjct 32116 CTTCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACTGGAC 32175 Query 167547 ACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGC 167606 | || || || ||||||||||||||||| ||| | || |||| |||||| |||| ||| Sbjct 32176 TTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTTGTGC 32235 Query 167607 AATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTT 167666 || || |||| || ||||| || || | | |||||||||||| |||||||| || Sbjct 32236 GATTCACGGTGCAACTGTAGAAAACACACTATTTGAAGATGGTGATGGTGCAAACACATT 32295 Query 167667 TAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATT 167726 || || | | || |||| ||||| || |||||||||||||| ||||| || || Sbjct 32296 CCGTGCGTTTAACCCAACACAGGCTGAAGAAACATATTCAATGGTTACGGCAAATCGTTT 32355 Query 167727 CTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTT 167786 |||||| || || || || | ||||| |||||||| ||| | || ||||||||||| Sbjct 32356 CTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTT 32415 Query 167787 ATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAA 167846 ||| ||||| || | || ||||||| | |||||| | | ||| | ||| | || Sbjct 32416 ATTTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGCGTTGTAGGTTTAGCTTTAAA 32475 Query 167847 TCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGA 167906 | | ||||| || ||||||||||| ||||| || | || ||||| ||||| || ||||| Sbjct 32476 TTTACGTGCATATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAATTTGA 32535 Query 167907 AACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTAT 167966 |||||||||||| ||||| || ||| | || |||||| |||| || ||| | || || Sbjct 32536 AACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCA 32595 Query 167967 CGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACT 168026 ||||| |||||||| || |||| ||||| ||||| ||| | ||||| || ||||| || Sbjct 32596 AGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCT 32655 Query 168027 ATAA 168030 ||| Sbjct 32656 TTAA 32659 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 |||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||||| || Sbjct 95890 TCCTCAGTAGCTCAGCGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCAAGTC 95831 Query 18189 CTACCTGGGGAG 18200 |||||||||||| Sbjct 95830 CTACCTGGGGAG 95819 Score = 82.4 bits (90), Expect = 9e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 18009 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGC-TTTGCAAGCAGGATGTCAGCGGTTCGAG 18067 ||||| ||||||||||||||||||| |||| |||||| | ||||||||||||||||| Sbjct 49543 GGGGATATAGCTCAGTTGGTAGAGCG-CTGCTTTTGCACGGCAGATGTCAGCGGTTCGAG 49601 Query 18068 TCCGCTATTCTCCA 18081 |||||| |||||| Sbjct 49602 TCCGCTTATCTCCA 49615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561246877504000