Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq148 585 8e-163 >seq148 Length=122497 Score = 585 bits (648), Expect = 8e-163 Identities = 719/975 (74%), Gaps = 8/975 (1%) Strand=Plus/Minus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 |||||| ||||| || ||| | |||||| | || | || ||||| || || | Sbjct 78886 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 78827 Query 41294 ATGATTCCGTGCCTCCTTGCCGCTACAACTT--GTTTT-ATTATCGCCTTTGTTGGCGCA 41350 ||||| || ||| || || |||||| ||||| |||||||| ||| | | || Sbjct 78826 ATGATCCCTA--CTCTTTTAA-CTGCAACTTCTGTTTTCATTATCGCGTTTATCGCGGCT 78770 Query 41351 CCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAAC 41410 || |||||||| |||||||| ||||| || || || |||| || | || || || ||| Sbjct 78769 CCTCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAAC 78710 Query 41411 AACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCA 41470 |||||||| | || || | |||| | ||| || ||||| |||||||||||||| Sbjct 78709 AACATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCA 78650 Query 41471 ATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACC 41530 |||||||||||||| | | ||||| ||| | |||||||| ||||| | |||||| | | Sbjct 78649 ATTTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATC 78590 Query 41531 GTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTAT 41590 || | |||||| || | || || | | |||||||||| || || |||||| ||| || | Sbjct 78589 GTTTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAA-TTATCTTT 78531 Query 41591 C-GACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGAC 41649 | | |||| ||| | || |||||| ||||| ||||| || || || || || || || Sbjct 78530 CCGTTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTAC 78471 Query 41650 TGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGG 41709 ||||| ||| || | || || | || || || ||||| ||||| | |||||| || || Sbjct 78470 AGCTGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGG 78411 Query 41710 GATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCA 41769 || || || || ||||||| |||| | || ||||| ||||||||||| ||||||||||| Sbjct 78410 TATCTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCA 78351 Query 41770 TCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCA 41829 || || |||||||| ||||| || || ||||||||||| || |||||||| ||||| Sbjct 78350 CCCATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCA 78291 Query 41830 CGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTA 41889 |||| || || || || || | |||||||| || |||||| | | ||| ||| | Sbjct 78290 CGGTTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGCTAACGA 78231 Query 41890 TGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTT 41949 |||||||| || |||||||| ||||| |||||||| || ||||| ||||| ||||| || Sbjct 78230 AGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTT 78171 Query 41950 TGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCT 42009 ||||| | || |||||||||||| || || || || ||| | || ||||| | Sbjct 78170 CGGTCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTT 78111 Query 42010 TGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTT 42069 ||||| ||||| ||||| ||||||||||| |||| | || | || || ||||| || Sbjct 78110 AGCTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATT 78051 Query 42070 CAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAA 42129 |||||| |||||||||||||| |||||||| | ||| | | | || | || ||||| Sbjct 78050 CAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAA 77991 Query 42130 CACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAA 42189 ||| ||||| |||||| | |||||||| ||| | || | || || ||||| ||||| || Sbjct 77990 CACTTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAA 77931 Query 42190 CGCACACAACTTCCC 42204 ||| ||||||||||| Sbjct 77930 CGCTCACAACTTCCC 77916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146214122192640