Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq148 600 3e-167 >seq148 Length=122497 Score = 600 bits (664), Expect = 3e-167 Identities = 728/985 (74%), Gaps = 10/985 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||| | ||||| ||| ||| | |||||| | || | || |||||| Sbjct 78895 TGGGCTCGTTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTT 78836 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGTTTT-ATTGTCGCTTTCAT 42398 ||||| | ||||| || ||| | |||| || | |||||| ||| |||| || || Sbjct 78835 GGTGTATTAATGATCCCTACTCTTTTAACTGCAACTTC-TGTTTTCATTATCGCGTTTAT 78777 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 || || ||||| || || || ||||| || ||||| ||||| ||||| || | | || Sbjct 78776 CGCGGCTCCTCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATA 78717 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || |||||||||||| ||||||| | | |||| |||||| || || |||| || Sbjct 78716 CGGAAACAACATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTT 78657 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| | | || || ||| | ||||| || || ||||| || Sbjct 78656 CTACCCAATTTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCA 78597 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || |||| | |||||| | | ||| | | |||||| |||| || ||||||||| | Sbjct 78596 ACTTATCGTTTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATT 78537 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 || | ||| | || ||| | || |||||| ||||||||||| || || || ||||| Sbjct 78536 ATCTTTCCGTTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGC 78477 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 ||| || || || ||| || |||| ||| | || ||||||||||| || || || ||||| Sbjct 78476 AGCTACAGCTGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCC 78417 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 | | || || || ||||| |||||||||||| | || ||||| ||||| || |||||||| Sbjct 78416 TTTAGGTATCTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCT 78357 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || ||||| ||||||||||| || || ||||||||||| || || ||||| || Sbjct 78356 TATGCACCCATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGC 78297 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAA--AGC 42936 ||||| ||| ||||| || |||||| | | |||||||| |||||||||||| ||| Sbjct 78296 AATGCACGGTTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGC 78237 Query 42937 CAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCAT 42996 || | || ||||| ||||||||||| || || ||||| ||||| |||||||| ||| Sbjct 78236 TAACG--AAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCAT 78179 Query 42997 GGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCAC 43056 || ||||| || || | || ||||||||||| || || || || ||| || || ||| Sbjct 78178 GGCTACTTCGGTCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACAC 78119 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACT 43116 ||||| | || |||||||| ||||| || |||||||||||| || | || | ||| Sbjct 78118 TTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACT 78059 Query 43117 ATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAA--TC 43174 ||||| || ||||| |||||||| ||||| ||||||||| |||| ||| ||| || || Sbjct 78058 ATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGAT--TCACAAGGTC 78001 Query 43175 ATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGC 43234 ||| ||| |||||||| || ||| | || ||||| ||| | || | || || |||| Sbjct 78000 GTGTAATCAACACTTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 77941 Query 43235 ACGAGCGGAATGCACATAACTTCCC 43259 ||||||| || || || |||||||| Sbjct 77940 ACGAGCGTAACGCTCACAACTTCCC 77916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143532527287680