Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq148 760 0.0 >seq148 Length=122497 Score = 760 bits (842), Expect = 0.0 Identities = 770/998 (77%), Gaps = 12/998 (1%) Strand=Plus/Plus Query 67834 TCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATA 67893 ||| || |||| | || | ||||||||||| ||||||||||| ||||| ||||||||| Sbjct 77895 TCAACAACAGCTAAATCTAATGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 77954 Query 67894 CCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACT---- 67949 || || ||| ||||||| || ||||||||| || | || |||| || || Sbjct 77955 CCTAAGTTAGCACGGTTGATAATGTCTGCCCAAGT--GTTGA---TTACACGACCTTGTG 78009 Query 67950 -ATCAAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACAC 68008 ||| | | || |||||||||||||||||||| | |||||||||||| || || || Sbjct 78010 AATCTACAACTGATTGGTTGAAGTTGAAACCATTTAAGTTGAATGCCATAGTTGAAATAC 78069 Query 68009 CAAGTGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAAC 68068 | | ||||||||||| |||||||| || ||||| ||||| | ||||||||| | |||| Sbjct 78070 CTAAAGCAGTGAACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAAC 78129 Query 68069 GGGAGTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAA 68128 | ||||||||||| || ||||| ||||| || | |||||||||||| ||||| || |||| Sbjct 78130 GAGAGTTGTTGAATGAAGCATATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAA 78189 Query 68129 CAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTT 68188 | ||||||||||| ||||||||||||||||| |||||||| | ||| || || ||| Sbjct 78190 CGATGTTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGTTTT 78249 Query 68189 CAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAG 68248 |||| |||||||||| | |||||||| || || ||||| ||||||||| ||| | | Sbjct 78250 CAGTAGTTTCACGAATTAAAGAAGAAGTTACAAGTGAACCGTGCATTGCAGAGAATAATG 78309 Query 68249 ATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCT 68308 | ||||||||||| ||||| || || ||||| ||||| |||||||| || |||||||||| Sbjct 78310 AACCACCAAATACACCAGCTACACCAAGCATGTGGAATGGGTGCATAAGAATGTTGTGCT 78369 Query 68309 CTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAG 68368 | |||||||| || | |||| ||||||||||||| || || || | |||||| |||||| Sbjct 78370 CAGCTTGGAATACGATCATGAAGTTGAAAGTACCTGAGATACCTAAAGGCATACCGTCAG 78429 Query 68369 AGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTG 68428 |||| ||||||||||||| || |||| | ||| || || | ||||| ||||| |||| Sbjct 78430 AGAAAGAACCTTGACCGAGTGGGTAGATAATGAATACAGCTGTAGCTGCAGCAACTGGTG 78489 Query 68429 CAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCAC 68488 | ||||| ||||| |||||| ||||||||||| | ||| | || | ||||||||||| Sbjct 78490 CTGAGTAAGCAACTGCGATCCATGGACGCATACCTAAACGGAAAGATAATTCCCATTCAC 78549 Query 68489 GTCCCATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCAC 68548 | |||||||| | | | | ||| | | ||||||| | | | |||||| ||||||||| Sbjct 78550 GACCCATGTAAGAACATACACCTAAGAAGAAGTGACAAACGATAAGTTGGTAAGGACCAC 78609 Query 68549 CATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAA 68608 | ||||| ||||||||||| | | ||| ||||||||||| || || ||||| | ||| | Sbjct 78610 CGTTGTATAACCACTCATCTAAAGATGCAGCTTCCCAAATTGGGTAGAAGTGTAAACCGA 78669 Query 68609 TTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAAC 68668 | || || || |||||| || ||||||| ||||||||||| || || | | ||||| Sbjct 78670 TAGCGTTAGATGTAGGAATAATTGCACCAGTGATGATGTTGTTTCCGTATAATAATGAAC 78729 Query 68669 CAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGA 68728 ||| ||||| ||||| ||||||||||| || ||||| ||||| ||||| || |||| | Sbjct 78730 CAGATACAGGCTCACGGATACCATCGATATCAACAGGAGGAGCCGCGATAAACGCGATAA 78789 Query 68729 TG-AAACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACG 68787 || ||||||| ||||| | | || ||||||||||| | || || |||||||| | | Sbjct 78790 TGAAAACAGA-AGTTGCAGTTAAAAGAGTAGGGATCATTAATACACCAAACCAACCGATG 78848 Query 68788 TAAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 || | ||||| || ||| ||| ||||| || || || Sbjct 78849 TATAAACGGTTTTCAGTGCTAGTTACCCACTCACAAAA 78886 Score = 614 bits (680), Expect = 6e-171 Identities = 758/1031 (74%), Gaps = 4/1031 (0%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || | ||| || || |||||||||| |||||||| || | Sbjct 32660 ATTAAAGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACAAGTTTTTCATGAGGCT 32601 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| ||||||| |||||| || || ||||| || ||||| |||| Sbjct 32600 GATCTTGAGCAGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTTGTATAGA 32541 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | || || || || || ||||| || || | || ||||| || || || ||||| |||| Sbjct 32540 AAGTTTCAAATTCAGGATCTTCCGCAGCGCGAATTTCTTGTGAAACGAAATCATATGCAC 32481 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | | || | ||| | ||| | || || || | ||| |||||||||| | || |||| Sbjct 32480 GTAAATTTAAAGCTAAACCTACAACGCCAATAGCACTCATCCAAAGACCAGTTACTGGAA 32421 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| ||||||||||| || ||||| | || || ||| || | |||||| || || | Sbjct 32420 CAAATAACATAAAGAAGTGTAACCAACGTTTGTTTGAAAAAGCTACACCAAAAATTTGTG 32361 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 ||||||| || ||||| ||||||||||| || |||||||| | || || | || || | Sbjct 32360 ACCAGAAACGATTTGCCGTAACCATTGAATATGTTTCTTCAGCCTGTGTTGGGTTAAACG 32301 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| |||||||| |||||||||||| | || || || ||||| || |||| | Sbjct 32300 CACGGAATGTGTTTGCACCATCACCATCTTCAAATAGTGTGTTTTCTACAGTTGCACCGT 32241 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| ||| |||| |||||| |||| || | ||| ||||||||||||||||| || |||| Sbjct 32240 GAATCGCACAAAGTAATGCAGCACCAAGTACACCCGCTACACCCATCATATGGAAAGGGT 32181 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 | || |||||||| ||||| ||||| | ||| | || |||||| || ||||| | || | Sbjct 32180 TTAAAGTCCAGTTGTGGAAGCCTTGGAAGAATAAAATGAATCGGAAAATTGCAGCTACAC 32121 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 |||| ||||| |||||||||| ||||| || | ||| || || | || ||| || Sbjct 32120 CGAAGCTAGGAGCAAAAAACCAACCAGATTGTCCTAAAGGATAAATTAAGAAAACAGAAA 32061 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGA-TGAGA 67244 | || |||| |||||| | ||||| |||||||| || || ||||| || | ||| | Sbjct 32060 CGAATACAGAAATAGGAGCTGAGAAAGCAATAGCGTTATATGGACGAATTTTTACTGA-A 32002 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 ||||| | ||||||||| ||||||||||||||||| |||| |||| |||||| || || Sbjct 32001 CGTGCAATTTCAAACTGACGAAGCATGAAACCAATAAGAGAAAAAGACCCGTGAAGGGCA 31942 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 ||||| |||| || || || | ||| ||| || ||||| || |||| |||||| Sbjct 31941 ACAAATGTCCAAAGACCACCTAATTGACACCAACGAGTAAAATCACCTTGAGCTTCAGGA 31882 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 |||||||| | | | ||| ||||||||| || || || ||||| ||||| ||||| Sbjct 31881 CCCCAAAGGAATAATAAAGAGTGACCCATACTATTCGCTGGAGTTGATACAGCAGCTGTT 31822 Query 67425 AGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGACA 67484 | || || ||| || | ||| |||||| | || ||||| ||||| ||| ||| Sbjct 31821 AAGAAGTTGCAACCTTCTAAATATGAAGACGCTAAACCATGAGTATACCAAGATGTTACA 31762 Query 67485 AACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGT-GGGAAAAAGAAGTAG 67543 || ||||| || || | ||| ||||| | ||| | || || || ||||| || || || Sbjct 31761 AATGTAGTTCCTGTGAACCAACCACCTAGTGCAAGGTATGCTGTAGGGAATAATAA-TAA 31703 Query 67544 TCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGGACATCGAA 67603 || ||||| || || || || || || || || |||||||||||||| ||||| || Sbjct 31702 CCCTGACCATCCTACGAAAACGAAACGGTCACGACGAAGCCAGTCATCAACAACATCAAA 31643 Query 67604 CCACCCCCGTT 67614 ||| || |||| Sbjct 31642 CCAACCGCGTT 31632 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 |||||||||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||| Sbjct 95819 CTCCCCAGGTAGGACTTGAACCTACGACCAATCGGTTAACAGCCGACCGCTCTACCGCTG 95878 Query 35571 AGCTACTGAGGATT 35584 |||||||||||||| Sbjct 95879 AGCTACTGAGGATT 95892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572053255891200