Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq148 794 0.0 >seq148 Length=122497 Score = 794 bits (880), Expect = 0.0 Identities = 774/994 (78%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 157579 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 157638 ||| || |||||||||||| || | ||||| | || |||||||||| || ||| | Sbjct 78887 TTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 78828 Query 157639 GATGATTCCAACTCTGTTGGCAGCAACCATCTGTTT-CATCGTCGCCTTCGTCGCTGCTC 157697 ||||| || ||||| || | ||||| ||||||| ||| |||| || |||| |||| Sbjct 78827 AATGATCCCTACTCTTTTAACTGCAACT-TCTGTTTTCATTATCGCGTTTATCGCGGCTC 78769 Query 157698 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 157757 | ||||| || ||||| || |||||||| || || |||||||| | | || || |||| Sbjct 78768 CTCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAACA 78709 Query 157758 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 157817 |||||||| |||||||| || | || | || ||||| || ||| | |||||||| || | Sbjct 78708 ACATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCAA 78649 Query 157818 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 157877 | |||||||| ||||| | ||||||||| | || ||||||||||||| |||||| | | Sbjct 78648 TTTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCG 78589 Query 157878 TATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACC 157937 | | ||||||| || | ||| | | | | |||||||| ||||| |||||| | || | || Sbjct 78588 TTTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTTCC 78529 Query 157938 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 157997 ||||||||||||| || |||||| || || || || || ||||| |||||||| | | Sbjct 78528 GTTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAG 78469 Query 157998 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158057 |||||||| | |||| || ||||||||||||||||||| || | ||||||| | |||| Sbjct 78468 CTGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTA 78409 Query 158058 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158117 |||| |||||||| |||| |||| | ||||||||||| || |||||||| |||||||||| Sbjct 78408 TCTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCACC 78349 Query 158118 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 158177 | ||||| ||||| ||||| ||||| ||||| ||||| || | |||||||| ||||||| Sbjct 78348 CATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 78289 Query 158178 GAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACG 158237 | || || ||||| || | |||||||||| ||||||| || ||| ||| | | Sbjct 78288 GTTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGCTAACGAAG 78229 Query 158238 GTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 158297 ||||||| ||||||||||| ||||| || || |||||||| ||||| ||||||||||||| Sbjct 78228 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCG 78169 Query 158298 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158357 ||||||| || |||||||| ||||||||||||||||| ||||| || ||||||||| | | Sbjct 78168 GTCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 78109 Query 158358 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 158417 |||| ||||| ||||| || || |||||||| || | || | || || |||||||||| Sbjct 78108 CTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCA 78049 Query 158418 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158477 || | || ||||||||||||||||| || | | ||| || |||||||| | |||| Sbjct 78048 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACA 77989 Query 158478 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158537 | |||||||| | | ||||| ||| | ||||||||||| ||||| |||||||||| Sbjct 77988 CTTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACG 77929 Query 158538 CACACAACTTCCCACTCGACCTTGCTGCTGCTGA 158571 | |||||||||||| | || | |||| || ||| Sbjct 77928 CTCACAACTTCCCATTAGATTTAGCTGTTGTTGA 77895 Score = 524 bits (580), Expect = 8e-144 Identities = 735/1026 (72%), Gaps = 4/1026 (0%) Strand=Plus/Plus Query 159288 GGGTGGTTCGACATCCTCGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGG 159347 || ||||| || | | |||||||||||| || || || || ||||| || || ||| Sbjct 31637 GGTTGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGG 31696 Query 159348 TCTGGACTACTACTTCTTCCC-ACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCAC 159406 || || || || || ||||| || || || || || | || |||||| | || || || Sbjct 31697 TCAGGGTTATTA-TTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAAC 31755 Query 159407 AGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAA 159466 | ||||| || |||||| || || ||| | || ||| ||| | || ||| || Sbjct 31756 TACATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAA 31815 Query 159467 CTTTCTCACAGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACT 159526 ||| | ||||| ||||| || || || || | ||||||||| ||| | | | || Sbjct 31816 CTTCTTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCTTTATTATTCCT 31875 Query 159527 TTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAA 159586 |||||||||||| |||| || |||| || ||||| ||| | || || | |||| Sbjct 31876 TTGGGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGAC 31935 Query 159587 TTTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACT 159646 ||||| || || ||||| | || | || |||||||||||||| |||||||||||| | Sbjct 31936 ATTTGTTGCCCTTCACGGGTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAAT 31995 Query 159647 GGCACGTCTCA-TTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTG 159705 |||||| ||| | || ||||| || || |||||||| ||||| | ||||||| ||| Sbjct 31996 TGCACGT-TCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTTCTG 32054 Query 159706 TTTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGT 159765 | || || || ||| | || || || || || || || |||||||||| ||||| Sbjct 32055 TATTCGTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTCCTA 32114 Query 159766 CCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGA 159825 ||| || || || ||||| || ||||| | || ||| | ||||| || |||||||||| Sbjct 32115 GCTTCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACTGGA 32174 Query 159826 CGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTG 159885 | ||||| || |||||||||||||| || || ||| |||| |||| ||| |||| ||| Sbjct 32175 CTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTTGTG 32234 Query 159886 CCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCT 159945 | || || || | |||||||| |||||||| | ||||||||| || ||||| || | Sbjct 32235 CGATTCACGGTGCAACTGTAGAAAACACACTATTTGAAGATGGTGATGGTGCAAACACAT 32294 Query 159946 TTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCT 160005 | |||||| | |||| || | || || || || || ||||| || ||||| || | Sbjct 32295 TCCGTGCGTTTAACCCAACACAGGCTGAAGAAACATATTCAATGGTTACGGCAAATCGTT 32354 Query 160006 TCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGT 160065 ||||||| || || || ||| | || ||||| ||||| || ||| | || ||||| |||| Sbjct 32355 TCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGT 32414 Query 160066 TGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTA 160125 | ||||| || || | |||||||||| |||||||| || | || | ||| | | Sbjct 32415 TATTTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGCGTTGTAGGTTTAGCTTTAA 32474 Query 160126 ATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTG 160185 || | ||||| || |||||||| ||||| || | || || |||||||| ||||||| Sbjct 32475 ATTTACGTGCATATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAATTTG 32534 Query 160186 AGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTG 160245 | || ||||| || ||||| || || || |||||||| | ||||| ||| |||| || Sbjct 32535 AAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTC 32594 Query 160246 CTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCC 160305 ||||| || |||||||| || | ||||| || || || || || | || ||||| | Sbjct 32595 AAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTC 32654 Query 160306 TTTAAT 160311 |||||| Sbjct 32655 TTTAAT 32660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548373303251200