Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq148 710 0.0 >seq148 Length=122497 Score = 710 bits (786), Expect = 0.0 Identities = 753/988 (76%), Gaps = 10/988 (1%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 ||||||||||||||||| |||||| || || | ||| | |||||||||||||| ||| Sbjct 78886 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 78827 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 |||||||| |||| ||||||| || || ||||||| | || || ||||| |||||| Sbjct 78826 ATGATCCCTACTCTTTTAACTGCAACTTCTGTTTTCATTATCGCGTTTATCGCGGCTCCT 78767 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 || || |||||||| || ||| | || || || | ||||| || ||||| || |||||| Sbjct 78766 CCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAACAAC 78707 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474 |||||| ||||||| | |||| | || ||||| || || ||||||||||| || || Sbjct 78706 ATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCAATT 78647 Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534 |||||||| || || | || |||||||| || ||||| ||||||||||| | | || Sbjct 78646 TGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTT 78587 Query 72535 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 72594 | |||||| | | || | | | | ||||||||| | | |||||| |||| | | | Sbjct 78586 TGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTTCCGT 78527 Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 72654 |||| ||| | || ||||| || || ||||||||||| || ||||||| || Sbjct 78526 TTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 78467 Query 72655 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 72714 |||||| || | || ||| ||||||| ||||| |||||||| |||||||| |||||||| Sbjct 78466 GTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATC 78407 Query 72715 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 72774 |||||||| |||||||||||| |||| |||||||| || |||||||| || |||||||| Sbjct 78406 TCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCACCCA 78347 Query 72775 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 72834 ||||| ||| |||||||| ||| | || |||||| | ||| ||||||||||||| Sbjct 78346 TTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGGT 78287 Query 72835 TCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAA--AACTACG 72892 |||||||| ||||| ||| |||| | || || || || ||||| ||| ||| | | Sbjct 78286 TCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAA--TCAGCTAACGAAG 78229 Query 72893 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 72952 | || || ||||| |||||||||||||| || ||||| ||||| |||||||| ||||||| Sbjct 78228 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCG 78169 Query 72953 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 73012 || | ||||| ||||| ||||| ||||||||||||||||||||||||||||||||| | | Sbjct 78168 GTCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 78109 Query 73013 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCA 73072 ||| | || || || || | ||||| || | | ||||| | || |||||||||| Sbjct 78108 CTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCA 78049 Query 73073 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGT-ACCA 73131 || | || || ||||||||||||||||||||||||||| || | || ||| | || Sbjct 78048 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGG---TCGTGTAATCA 77992 Query 73132 ACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 73189 ||| |||| ||| || | ||| | || ||| | || |||||||| ||||| || | | Sbjct 77991 ACACTTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTA 77932 Query 73190 ATGCACACAACTTCCCACTAGACCTAGC 73217 | || |||||||||||| |||| |||| Sbjct 77931 ACGCTCACAACTTCCCATTAGATTTAGC 77904 Score = 508 bits (562), Expect = 7e-139 Identities = 744/1047 (71%), Gaps = 33/1047 (3%) Strand=Plus/Plus Query 73361 TGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCT 73420 |||||||| ||| ||||||| ||| | | || |||||||| ||| | |||||||| Sbjct 31640 TGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGGTCA 31699 Query 73421 GGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACT 73480 || | ||| | || ||| || ||||| ||| | || ||||||||| ||||||||| Sbjct 31700 GGGTTATTATTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAACTACA 31759 Query 73481 TTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTT 73540 || || || || ||||| || |||||| | || || |||||| | || || || || Sbjct 31760 TTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAACTTC 31819 Query 73541 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGG 73600 ||||| || || |||||||| || | || ||||||||| | |||| ||||||||| Sbjct 31820 TTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCTTTATTATTCCTTTGG 31879 Query 73601 GGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 73660 || || || || ||||| ||| || || |||| |||||||||||| || |||| ||| Sbjct 31880 GGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGACATTT 31939 Query 73661 GTAGCATTACATGGAGTC-TTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGC 73719 || || | || || ||| ||| || || |||||||||||| | |||||||| ||||| Sbjct 31940 GTTGCCCTTCACGG-GTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 31998 Query 73720 AGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATT 73779 | | || || ||||| || ||||| | ||||| ||||| ||| | ||||| Sbjct 31999 ACGTTCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTTCTGTATT 32058 Query 73780 CACGAGCATC---TTTC-TAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTT 73835 | | || |||| |||| |||||||||||||| | ||||||| || || ||| Sbjct 32059 C----GTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTCCTA 32114 Query 73836 CATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAA 73895 |||||||| || ||||| || || | ||||||||| | || || |||||||| | Sbjct 32115 GCTTCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACTGGA 32174 Query 73896 CTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTG 73955 || | || || || ||||||||||||||||| ||| ||||||||| |||||||| |||| Sbjct 32175 CTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTTGTG 32234 Query 73956 CCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAG 74015 | || || |||||||| ||| | |||||| | | |||||| || | Sbjct 32235 CGATTCACGGTGCAACTGTAGAAAACACACTATTTGAAGA---------------TG--G 32277 Query 74016 GTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATA 74075 | | | ||| | || ||| | || || | || ||||||| ||||| || ||| Sbjct 32278 TGATGGTGCAAAC----ACATTCCGTGCGTTTAACCCAACACAGGCTGAAGAAACATATT 32333 Query 74076 GTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAA 74135 ||| |||| || || | ||||||||||| || |||||| |||| |||||||||||| Sbjct 32334 CAATGGTTACGGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAAC 32393 Query 74136 GATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAG 74195 | | ||||||||| ||||||| || || || || | ||| | |||| |||| | Sbjct 32394 GTTGGTTACACTTCTTTATGTTATTTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTG 32453 Query 74196 GTATCGTAGGTCTAGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGA 74254 | | |||||| |||| |||| ||| | ||||| || || || || ||||| || | Sbjct 32454 GCGTTGTAGGTTTAGC-TTTAAATTTACGTGCATATGATTTCGTTTCACAAGAAATTCGC 32512 Query 74255 GCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGT 74314 || || ||||| || || |||||||| ||||| || || || |||||| | || |||||| Sbjct 32513 GCTGCGGAAGATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGT 32572 Query 74315 ATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAA 74374 || | || |||||| | || ||||| || ||||| || |||| ||||| || || Sbjct 32573 ATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAG 32632 Query 74375 GTCTTGCCACGAGGCAACGCACTATAA 74401 || || ||||| || ||||| || ||| Sbjct 32633 GTTTTACCACGTGGAAACGCTCTTTAA 32659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572872454252800