Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq115 120 4e-21 seq32 114 2e-19 seq22 111 2e-18 seq123 96.9 4e-14 seq103 96.9 4e-14 seq117 86.0 8e-11 >seq115 Length=3126412 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| || |||||||||||||||||||||||| || | | | Sbjct 1813110 GCTTGGCCAGCTCGCCGGGCAGGACCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTCA 1813051 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||| |||||| | | | ||| || ||||| || | |||| || | | Sbjct 1813050 GGGTGGGCTTCTTGTTGACGCGGGACAGCTGGGCGGCCGCGCTCGCGATCTTCTCAAACT 1812991 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| || || ||||| | || | ||| |||||| |||||||||| |||||||| Sbjct 1812990 GGTCCACGATGAAGGAGTTGAGGATGGCCATGGACTTGGAGGAGATGCCCGTGTCGGGGT 1812931 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||||||||||||| ||||| Sbjct 1812930 GCACCTGCTTGAGCACCTTGAAGATG 1812905 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||||||||||||||| || | | | | Sbjct 1163301 GCTTGGCCAGCTCGCCGGGCAGCACCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGCCA 1163242 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||| |||||| | | | ||| || |||| || | |||| || | | Sbjct 1163241 GGGTGGGCTTCTTGTTGACGCGGGACAGCTGGGCGGCGGCGCTCGCGATCTTCTCAAACT 1163182 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| || || ||||| | || | ||| |||||| ||||||||| |||||||| Sbjct 1163181 GGTCCACGATGAAGGAGTTGAGGATGGCCATGGACTTGGAGGAGATGCCGGTGTCGGGGT 1163122 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||||||||||||| ||||| Sbjct 1163121 GCACCTGCTTGAGCACCTTGAAGATG 1163096 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||||||||||||||| || | | | Sbjct 1365769 GCTTGGCCAGCTCGCCGGGCAGCACCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTCA 1365710 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||| |||||| | | | ||| || |||| ||| | |||| || | | Sbjct 1365709 GGGTGGGCTTCTTGTTGATGCGGGACAGCTGGGCGGCGGCGGCGGCGATCTTCTCAAACT 1365650 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| || || ||||| | || | ||| |||||| ||||||||| |||||||| Sbjct 1365649 GGTCCACGATGAAGGAGTTGAGGATGGCCATGGACTTGGAGGAGATGCCGGTGTCGGGGT 1365590 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||||||||||||| ||||| Sbjct 1365589 GCACCTGCTTGAGCACCTTGAAGATG 1365564 >seq32 Length=3221238 Score = 114 bits (126), Expect = 2e-19 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 ||||||||||||||||||||||||||||| ||||||| |||||| ||| ||||| ||| Sbjct 1864594 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAG 1864653 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCG 869326 |||||||| ||| |||||| | | |||||||| |||||| | ||| Sbjct 1864654 ATGCCCTCCACGCACGCAAAGGCCACCAGCCGCTCAGCAAAGCTCTCG 1864701 Score = 89.7 bits (98), Expect = 6e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 869677 CACCTCTGCCACTTGGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCC 869736 |||||| | || |||| |||||||||||| ||| || |||||||||| ||| ||||| Sbjct 1865610 CACCTCGGGGACCTGGATCTCCTTCATGAAGCGGGCGCCCAGGTTCTCAAGCACAATGCC 1865669 Query 869737 GTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCG 869785 |||| ||||||||| || || || ||||| ||| ||||| | |||| Sbjct 1865670 GTCGGAGGCGGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGCCTCTCG 1865718 >seq22 Length=1310629 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| || |||||||||||| ||||||||||| || | | | Sbjct 833640 GCTTGGCCAGCTCGCCGGGCAGGACCAGGCGCACGGCAGTCTGGATCTCCCGGGAGGTCA 833699 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||| |||||| | | | ||| || |||| ||| | |||| || | | Sbjct 833700 GGGTGGGCTTCTTGTTGACGCGGGACAGCTGGGCGGCGGCGGAGGCGATCTTCTCAAACT 833759 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| || || ||||| | || | ||| |||||| ||||||||| |||||||| Sbjct 833760 GGTCCACGATGAAGGAGTTGAGGATGGCCATGGACTTGGAGGAGATGCCGGTGTCGGGGT 833819 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||||||||||||| ||||| Sbjct 833820 GCACCTGCTTGAGCACCTTGAAGATG 833845 Score = 105 bits (116), Expect = 8e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| || ||||||||||| ||||||||||| || | | | Sbjct 653369 GCTTGGCCAGCTCGCCGGGCAGGACGAGGCGCACGGCAGTCTGGATCTCCCGGGAGGTCA 653428 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||| |||||| | | | ||| || |||| ||| | |||| || | | Sbjct 653429 GGGTGGGCTTCTTGTTGACGCGGGACAGCTGGGCGGCGGCGGAGGCGATCTTCTCAAACT 653488 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| || || ||||| | || | ||| |||||| ||||||||| |||||||| Sbjct 653489 GGTCCACGATGAAGGAGTTGAGGATGGCCATGGACTTGGAGGAGATGCCGGTGTCGGGGT 653548 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||||||||||||| ||||| Sbjct 653549 GCACCTGCTTGAGCACCTTGAAGATG 653574 >seq123 Length=4192086 Score = 96.9 bits (106), Expect = 4e-14 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||||| ||||||||||||| ||||| | |||| |||||| || ||||||||||| Sbjct 123150 CGTTGATGAACGAGTTCATGATGGACATGGCCTTGGAGGAGATACCGGTGTCGGGGTGCA 123209 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||||||||||||||| Sbjct 123210 CCTGCTTGAGCACCTTGTAGATG 123232 Score = 86.0 bits (94), Expect = 8e-11 Identities = 91/118 (77%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 733152 GAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGCAC 733211 ||||||||||||| || || | | ||| || |||||| || | |||||||||||| Sbjct 2036520 GAGGACATGCCCT--TCAGCGTGGAG-GGCATCAGCCCCGACCTCATCATCAACCCGCAC 2036576 Query 733212 GCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTGG 733269 |||||||| |||||||||||||| || | || | ||||| || || ||||||||| Sbjct 2036577 GCCATCCCCTCGCGCATGACCATTGGGCACTTGGTGGAGGCGCTGATGAGCAAGGTGG 2036634 >seq103 Length=954929 Score = 96.9 bits (106), Expect = 4e-14 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 1630084 GTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCGTTGGTGCCCGCC 1630143 ||||| || || || || ||||||||||| | ||||||| ||| ||||||||| Sbjct 464987 GTGTCATTGAACACACGCAGCATGGGCACAATGCCGTTGCTGGTGCCATTGGTGCCCCGA 465046 Query 1630144 ACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGACTTG 1630203 | ||| | ||| | |||||| | |||||| | | ||| |||||||| || |||||| Sbjct 465047 ATGTACGAGCCAGTGGCGCGAATGTTGTGCATCGAGAGGCCAATGCCGCCCGCTGACTTG 465106 Query 1630204 GAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||| || |||| ||||| || || |||||||| Sbjct 465107 GAGATGCAAGCACACTCCTTGAGGGTATCATAGATGCC 465144 >seq117 Length=2441637 Score = 86.0 bits (94), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 1349449 TACCTGCACGGTCTCGACCCGCCCATCGTGCACCGCGACCTCAAGAGCGGCAACCTGCTG 1349508 ||||||||||| | | | ||||||||| | ||||||||||| |||||| |||||||||| Sbjct 1859568 TACCTGCACGGCCACAAGCCGCCCATCATCCACCGCGACCTTAAGAGCCCCAACCTGCTG 1859509 Query 1349509 GTCGACCAAAACTACAACGTCAAGGTG 1349535 ||||| | |||| |||||||||| Sbjct 1859508 GTCGAGCGCAACTGGCGCGTCAAGGTG 1859482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107126069650720