Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq148 592 5e-165 >seq148 Length=122497 Score = 592 bits (656), Expect = 5e-165 Identities = 740/1004 (74%), Gaps = 8/1004 (1%) Strand=Plus/Minus Query 28617 TAACCCTTGGGAGCTTTTTACTAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGG 28676 || || ||||| | |||| | | ||||| ||| || | |||||| | || | || Sbjct 78902 TAGCCTTTGGGCTCGTTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGG 78843 Query 28677 GTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACCATCTGCTT-CATTATTG 28735 |||||||| | | ||||| || ||| | | || || |||| || |||||| | Sbjct 78842 TTGGTTTGGTGTATTAATGATCCCTACTCTTTTAACTGCAACT-TCTGTTTTCATTATCG 78784 Query 28736 CATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTC 28795 | || || ||||| || || ||||| || ||||| ||||| || ||||| |||| Sbjct 78783 CGTTTATCGCGGCTCCTCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCAT 78724 Query 28796 TTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGC-AATGCCATCGGA 28854 | | || |||||||||||||| | || || | | || | || | || || ||||| Sbjct 78723 TATTATACGGAAACAACATCATCACTGGTGCAATTATTCCTA-CATCTAACGCTATCGGT 78665 Query 28855 CTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGA 28914 |||||||||||||||||||||||||| || | ||||| ||| | |||||||| || Sbjct 78664 TTACACTTCTACCCAATTTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGT 78605 Query 28915 CCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAG 28974 || | ||||||| | || | |||||| || | || || | | |||||||||| || || Sbjct 78604 CCTTACCAACTTATCGTTTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAA 78545 Query 28975 TGGGAACTTAGCTATC-GACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCC 29033 |||||| ||| || || | |||| ||| | || ||||| || || |||||||| || Sbjct 78544 TGGGAA-TTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACC 78486 Query 29034 CGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGA 29093 || || || || | || || ||| | |||||||| |||||||||||||||| || Sbjct 78485 AGTTGCTGCAGCTACAGCTGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGA 78426 Query 29094 CGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACA 29153 || |||||||| ||||| ||||| || ||||||| |||| | || |||||||| || || Sbjct 78425 CGGTATGCCTTTAGGTATCTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCA 78366 Query 29154 TAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCT 29213 |||||||| |||||||| ||||||||||| || || ||||| || || ||||| || | Sbjct 78365 CAACATTCTTATGCACCCATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATT 78306 Query 29214 ATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGA 29273 ||| ||||||||||||||| ||||| || || || | | ||||| || |||||| | Sbjct 78305 ATTCTCTGCAATGCACGGTTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAA 78246 Query 29274 CATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGC 29333 | || ||| | |||||||| || || ||||||||||| ||||| |||||||| || Sbjct 78245 CGAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGC 78186 Query 29334 CGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTC 29393 ||||| || ||||| || ||||| || |||||||||||||| ||||| || ||||| Sbjct 78185 AGCTCATGGCTACTTCGGTCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTC 78126 Query 29394 TCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGT 29453 ||||||||||| | ||||| ||||| || || || ||||||||| |||| || || | Sbjct 78125 ATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTAT 78066 Query 29454 TTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACA-ACA 29512 ||| || ||||| || || | || ||||| ||||| ||||| || || | || ||| Sbjct 78065 TTCAACTATGGCATTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACA 78006 Query 29513 ATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAG 29572 | |||||||| || || |||||||| || || |||| || |||||| | || | |||| Sbjct 78005 A-GGTCGTGTAATCAACACTTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAG 77947 Query 29573 TAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 ||||||| |||||||| ||||| ||||||||| | ||| | ||| Sbjct 77946 TAATGCACGAGCGTAACGCTCACAACTTCCCATTAGATTTAGCT 77903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146665321335360