Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq148 801 0.0 >seq148 Length=122497 Score = 801 bits (888), Expect = 0.0 Identities = 775/993 (78%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518 |||| || |||||| ||||| || || | || ||| | ||| |||||||||| Sbjct 78895 TGGGCTCGTTTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTT 78836 Query 174519 GGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGTTT-CATTATCGCTTTCGT 174577 ||||| ||||||| ||||| | ||| | |||||| | ||||| ||||||||| || | Sbjct 78835 GGTGTATTAATGATCCCTACTCTTTTAACTGCAACT-TCTGTTTTCATTATCGCGTTTAT 78777 Query 174578 GGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTA 174637 | ||||| || || || ||||| || |||||||| || ||| |||||||| | | || Sbjct 78776 CGCGGCTCCTCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATA 78717 Query 174638 TGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTT 174697 ||||||||||||||| |||||||| || |||||| || ||||| |||||| ||||||| Sbjct 78716 CGGAAACAACATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTT 78657 Query 174698 CTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCA 174757 ||||||||| |||||||| || | | || || ||| | |||||||||||||||| ||| Sbjct 78656 CTACCCAATTTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCA 78597 Query 174758 ACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAACT 174817 ||| | || | |||||| | | ||| | | | || ||||| ||||| |||||| | Sbjct 78596 ACTTATCGTTTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATT 78537 Query 174818 CTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGC 174877 |||| |||||||||||| | || |||||| || || ||||| ||||||||||| || Sbjct 78536 ATCTTTCCGTTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGC 78477 Query 174878 AGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCC 174937 |||| |||| |||||| | |||| || ||||||||||||| ||||| |||| ||||| Sbjct 78476 AGCTACAGCTGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCC 78417 Query 174938 CTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTT 174997 || |||||||| || || ||||||| |||| | || |||||||| || || ||||| | Sbjct 78416 TTTAGGTATCTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCT 78357 Query 174998 GATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGC 175057 |||||||| ||||||||| | || || || ||||| || ||||||||||| ||||| || Sbjct 78356 TATGCACCCATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGC 78297 Query 175058 GATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCACA 175117 ||||| ||||||||||| || ||||| | | ||||| || ||||||| || ||| Sbjct 78296 AATGCACGGTTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGC 78237 Query 175118 GAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGG 175177 ||| | |||||||| ||||| ||||||||||| || || |||||||| ||||| ||||| Sbjct 78236 TAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGG 78177 Query 175178 CTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTT 175237 ||||||||||||||| || |||||||| ||||||||||||||||| || ||| | ||||| Sbjct 78176 CTACTTCGGTCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTT 78117 Query 175238 CTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAAT 175297 ||||||||| || ||||||||||| ||||| |||||||| || | ||| |||| || || Sbjct 78116 CTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTAT 78057 Query 175298 GGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGT 175357 |||||||||| | |||||||||||||||||||| || ||| | || ||||||| | || Sbjct 78056 GGCATTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGT 77997 Query 175358 ATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGA 175417 | | ||||| ||||| || || | ||| | ||| | || |||||||||||||| || Sbjct 77996 AATCAACACTTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGA 77937 Query 175418 GAGAAATGCACACAACTTCCCACTAGATTTGGC 175450 | | || || |||||||||||| ||||||| || Sbjct 77936 GCGTAACGCTCACAACTTCCCATTAGATTTAGC 77904 Score = 531 bits (588), Expect = 7e-146 Identities = 734/1019 (72%), Gaps = 6/1019 (1%) Strand=Plus/Plus Query 175845 GGGTGGTATGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGG 175904 || |||| |||| || | || |||||||||| | || | || | || | || ||| Sbjct 31637 GGTTGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGG 31696 Query 175905 TCTGGATTACTACTTCTTCCC-ACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCAC 175963 || || ||| || || ||||| || || || ||||| | || || ||| | || || || Sbjct 31697 TCAGGGTTATTA-TTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAAC 31755 Query 175964 AACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAA 176023 || ||||| || |||||| || |||||| | || ||||| ||| | || ||| || Sbjct 31756 TACATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAA 31815 Query 176024 CTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACT 176083 ||| | ||||| ||||| || ||||| || || ||||||||| ||| | | | || Sbjct 31816 CTTCTTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCTTTATTATTCCT 31875 Query 176084 TTGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTC 176143 ||||||||||||| |||| || || || || ||| ||| | || || |||||| | Sbjct 31876 TTGGGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGAC 31935 Query 176144 CTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACT 176203 |||||||| || ||||| | || |||| ||||| ||||||||||||||||||||| | Sbjct 31936 ATTTGTTGCCCTTCACGGGTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAAT 31995 Query 176204 GGCAAGACTCATTGGTA-TCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTG 176262 ||| | ||| | | | ||||| || ||||||||||| ||| | |||||| ||| Sbjct 31996 TGCACGT-TCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTTCTG 32054 Query 176263 TATTTGTCAGTGTGTTTCTT-CTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCC 176321 |||| || ||| |||||| | || || |||| |||||| ||||| ||||| || Sbjct 32055 TATTCGTTTCTGT-TTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTCCT 32113 Query 176322 TCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGG 176381 ||| ||||| || ||||| || ||||| | || || | || || |||||||||||| Sbjct 32114 AGCTTCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACTGG 32173 Query 176382 ACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCT 176441 || | ||||| |||||||||||||| || || ||| |||| |||| ||| |||| | | Sbjct 32174 ACTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTTGT 32233 Query 176442 GCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACC 176501 || || || || | ||||| ||||| || |||| ||||||||| || ||||| Sbjct 32234 GCGATTCACGGTGCAACTGTAGAAAACACACTATTTGAAGATGGTGATGGTGCAAACACA 32293 Query 176502 TTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGC 176561 ||| |||||| | | || |||| ||||| || ||||| |||||||| || || || Sbjct 32294 TTCCGTGCGTTTAACCCAACACAGGCTGAAGAAACATATTCAATGGTTACGGCAAATCGT 32353 Query 176562 TTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATG 176621 |||||||| ||||| || || || || ||| || || |||||| | |||||||||||| Sbjct 32354 TTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATG 32413 Query 176622 TTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTT 176681 || ||||| || || | ||||||||| | ||||||| | | || | ||| | Sbjct 32414 TTATTTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGCGTTGTAGGTTTAGCTTTA 32473 Query 176682 AATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTT 176741 ||| | ||||| |||||||| || ||||| ||| | || || ||||||||||| ||| Sbjct 32474 AATTTACGTGCATATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAATTT 32533 Query 176742 GAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCT 176801 ||||||||||| ||||| || || ||| | |||||||| | | || |||||||| || Sbjct 32534 GAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCT 32593 Query 176802 GTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||||| || ||||| | |||||||||| || || ||| |||| | || ||||| Sbjct 32594 CAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGC 32652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729928140140800