Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq112 113 5e-20 seq25 107 2e-18 seq138 95.1 1e-14 seq35 84.2 2e-11 seq14 84.2 2e-11 seq117 82.4 9e-11 >seq112 Length=2452761 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| ||||| || ||||||||||| || || || || || ||||| || Sbjct 1009716 CAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTG 1009657 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||| | ||||| || || |||||||| |||| ||||| ||||| || || || || Sbjct 1009656 GAGGACGGCCGTACGCTCGCCGACTATAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 1009597 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || ||||| || Sbjct 1009596 CTGCGCCTGCGCGGCGG 1009580 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || || || || ||||| || ||||| | ||| Sbjct 1012374 GGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGT 1012315 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || |||||||| |||| ||||| ||||| || || || || |||| || ||| Sbjct 1012314 ACCCTCGCCGACTATAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGC 1012255 Query 27628 GGTGG 27632 || || Sbjct 1012254 GGCGG 1012250 >seq25 Length=3522502 Score = 107 bits (118), Expect = 2e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 |||| ||||| || | ||| |||||| || ||||| ||||||||| | || | | Sbjct 1244730 AGCGCTCCATCCCCTGCATGGTGGACGGGCTGAAGCCGGGCCAGCGCAAGATCATGTTTG 1244789 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080 ||||| ||||| |||||| ||| ||||| |||||||||||||||||||||||||||| Sbjct 1244790 CCTGCTTCAAGCGCAACCTGAAGAGCGACATCAAGGTGGCGCAGCTGTCGGGCTACGTGG 1244849 Query 32081 CAGAGCA 32087 | ||||| Sbjct 1244850 CGGAGCA 1244856 >seq138 Length=2592956 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || || || || ||||| || Sbjct 406221 CAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTG 406280 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||| | || ||| | || || ||||| | || ||||| ||||| || || || || Sbjct 406281 GAGGACGGCCGGACCTTGGCCGATTATAACATTCAGAAGGAGTCCACGCTGCACCTGGTG 406340 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || ||||| || Sbjct 406341 CTGCGCCTGCGCGGCGG 406357 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| ||||| || ||||||||||| || || ||||| || ||||| || Sbjct 405638 CAGGACAAGGAGGGCATTCCGCCCGACCAGCAGCGCCTTATCTTTGCGGGCAAGCAGCTG 405697 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATG 27586 ||||| | || || || || ||||||| || Sbjct 405698 GAGGACGGCCGGACGCTGGCCGACTATAGTG 405728 >seq35 Length=2876677 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| ||||| Sbjct 2472143 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCG 2472202 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| ||||||| || || |||||||||||||| Sbjct 2472203 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGG 2472246 >seq14 Length=1676047 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||||||||| || |||||||| || || || ||||| ||||| Sbjct 503684 ATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCCTCG 503625 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| ||||||| || || |||||||||||||| Sbjct 503624 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGG 503581 >seq117 Length=2441637 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || ||||| || ||||| || Sbjct 1798939 CAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTCATCTTTGCGGGCAAGCAGCTG 1798880 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 ||||| | || || || || ||||| || |||| |||| Sbjct 1798879 GAGGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGG 1798840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309259379200