Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq138 113 1e-19 seq112 113 1e-19 seq14 98.7 2e-15 seq35 89.7 1e-12 >seq138 Length=2592956 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || || ||||||||||| || | ||||| || || Sbjct 406342 AGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTATAATCGGCCAAGGTCCGGCCGTCC 406283 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 406282 TCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 406223 Query 211023 TG 211024 || Sbjct 406222 TG 406221 >seq112 Length=2452761 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || ||||||||||| || || || || | || || Sbjct 1009595 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGCGTACGGCCGTCC 1009654 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || |||| || ||||||||| Sbjct 1009655 TCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 1009714 Query 211023 TG 211024 || Sbjct 1009715 TG 1009716 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || ||||||||||| || || ||||| | || || Sbjct 1012265 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTACGGCCGTCC 1012324 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| |||||||| ||||| || ||||| || || Sbjct 1012325 TCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGG 1012368 >seq14 Length=1676047 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| ||||| || ||||||||||| ||| || |||||| Sbjct 503581 CCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACCTCG 503640 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| || || | |||||| Sbjct 503641 AGGGTGATGGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 503684 >seq35 Length=2876677 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || || | || || Sbjct 2472701 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCGTCC 2472642 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| |||||||| ||||| || |||||||| || Sbjct 2472641 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 2472598 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| ||||| || || |||||||| || || |||||| Sbjct 2472246 CCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGACTCCACCTCG 2472187 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| || || | |||||| Sbjct 2472186 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2472143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149623738400