Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq149 120 7e-22 seq148 100 7e-16 seq138 96.9 8e-15 >seq149 Length=72121 Score = 120 bits (132), Expect = 7e-22 Identities = 95/114 (83%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || ||||| |||||||| ||||| || |||||||| ||||||||||||||||| || Sbjct 51191 GAAAATCTGACCGTCAGTAATTGAGATTACGTTTGTAGGAATATAAGCAGAAACATCTCC 51132 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTT 4583 ||||||||||| | ||||| | ||||||||||| || ||||||| || ||| Sbjct 51131 AGCTTGTGTTTCAATTACAGGAAGTGCTGTTAGTGAACCGCCACCAACATCTTT 51078 Score = 105 bits (116), Expect = 2e-17 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 372630 ACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACG 372689 ||| || || |||| |||||||||||||||||||||||||||| ||||||| |||| ||| Sbjct 13287 ACAAAAGAGGGGGTGGCGACTGTTTACTAAAAACACAGGACTCTGCTAAGTGGTAACACG 13346 Query 372690 ATGTATAGGGTCTGACAC 372707 | |||||||||||||||| Sbjct 13347 ACGTATAGGGTCTGACAC 13364 Score = 98.7 bits (108), Expect = 2e-15 Identities = 82/99 (83%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAGGGCAGC 6826 |||||| ||||||||||||||||||||||| | ||||||||| | | | |||||| Sbjct 19297 TGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACGCTTTCGAGCGGCAGC 19356 Query 6827 AGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||| ||||||| |||||||||||||||| ||||| || Sbjct 19357 AGTGAGGAATATTGGACAATGGGCGAAAGCCTGATCCAG 19395 Score = 98.7 bits (108), Expect = 2e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| |||||||| || || ||||| ||||||||||| || || || || || |||| Sbjct 27939 TTCAGGGTGACCAAAGAACCAAAATAAGTGTTGATAAAGAATCGGGTCTCCACCACCTGC 27880 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||||| || |||| || ||||||||||| ||||| |||| Sbjct 27879 TGGATCAAAGAATGTAGTGTTGAAATTTCTATCTGTTAATAACA 27836 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/140 (76%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 7723 TTATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCG 7782 |||| || ||| ||||||| || | ||||| | || ||||||||||||| |||||| Sbjct 20000 TTATGTCAAGGACTGGTAAGGTTTTGCGCGTTGTTTCGAATTAAACCACATGTTCCACCA 19941 Query 7783 CTTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTG 7842 ||| | | | ||||| || |||||||||||| |||||| |||| | |||||| | Sbjct 19940 CTTGTGTGAGCCCCCGTCTATTCCTTTGAGTTTTAGTCTTGCGACCGTACTCCTCAGGCG 19881 Query 7843 GAATATTTA-CGCGTTAGCT 7861 || ||||| |||||||||| Sbjct 19880 GACCATTTACCGCGTTAGCT 19861 Score = 96.9 bits (106), Expect = 8e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 372630 ACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACG 372689 ||| || || |||| ||||||||| |||||||||||||||||| ||||||| |||| ||| Sbjct 69902 ACAAAAGAGGGGGTGGCGACTGTT-ACTAAAAACACAGGACTCTGCTAAGTGGTAACACG 69960 Query 372690 ATGTATAGGGTCTGACAC 372707 | |||||||||||||||| Sbjct 69961 ACGTATAGGGTCTGACAC 69978 Score = 91.5 bits (100), Expect = 4e-13 Identities = 141/200 (71%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 7530 TCAAATATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGT 7589 |||||| | |||| || |||| | || || || |||||||| || ||||| ||| | Sbjct 25899 TCAAATTCTAGGTGGAAACCACCAATTATATAATGTAATTATTACAGCTCATGCATTTTT 25958 Query 7590 TATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCC 7649 ||| | |||| ||| || ||||| | | | || || ||||| || ||||| || || || Sbjct 25959 AATGGTATTCTATTTAGTAATGCCAGCTTTAATGGGTGGTTTTGGGAATTGGTTTGTACC 26018 Query 7650 TTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATT 7709 | | ||||||||||| |||||||| || || | | || || || || ||||| | Sbjct 26019 AATTTTAATTGGTGCTCCAGATATGGCATTCCCCCGTTTAAATAACATTAGCTTTTGGCT 26078 Query 7710 ACTACCGCCTTC-CTTATTT 7728 |||| || || ||| ||| Sbjct 26079 TTTACCTCCATCTCTTCTTT 26098 Score = 89.7 bits (98), Expect = 1e-12 Identities = 104/139 (75%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 371368 GGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTT 371427 |||||| | ||||| | |||||| ||||||||||||| || |||||||| || || Sbjct 27758 GGTAATCTGTGCATGCTCATACCAGGAGCTCTCATATTAAAAATTGTAGTAATTAAATTG 27699 Query 371428 ATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGACG 371487 |||| || | || | | | ||||||||| ||||||||||| ||||| | ||| || Sbjct 27698 ATAGAACCAATAATACTACTTGCACCTGCAAGGTGTAAACTAAAAATTGCAAGATCAACT 27639 Query 371488 GAACCGCCGGAGTGAGCTA 371506 || || || ||||| |||| Sbjct 27638 GATCCACCAGAGTG-GCTA 27621 >seq148 Length=122497 Score = 100 bits (110), Expect = 7e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||| || || ||||| ||||| || |||||||| ||||| ||||| Sbjct 41829 GAAAATTTGACCATCAGTGATTGAAATAACGTTTGTTGGAATATAAGCTGAAACGTCACC 41770 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGT 4559 | |||| ||||| ||||||||||| || || Sbjct 41769 TTCTTGAGTTTCAACAACAGGTAAAGCAGT 41740 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 48704 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 48645 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || | | |||| || ||| || |||| Sbjct 48644 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTCCCCAGGCGGGATACTTCACGC 48585 Query 7855 GTTAGCT 7861 ||||||| Sbjct 48584 GTTAGCT 48578 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/113 (79%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 48037 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 48095 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 ||||| |||| || |||||||||||||| ||| ||| |||| ||||| Sbjct 48096 CAGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGA 48148 >seq138 Length=2592956 Score = 96.9 bits (106), Expect = 8e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || ||||| || || || | || ||||||||||| || Sbjct 406351 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTATAATCGGCCAAGGTC 406292 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||||||||| || || Sbjct 406291 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCC 406232 Query 225613 TCCTTGTCTTG 225623 |||||||| || Sbjct 406231 TCCTTGTCCTG 406221 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 225538 TAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGG 225597 |||||||||| || | ||||| || |||||||| ||||||||||| || || || ||| Sbjct 406778 TAATCGGCCAGCGTCCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATGAGGCGCTGCTGG 406719 Query 225598 TCGGGCGGAATACCTTCCTTGTCTTG 225623 |||||||| || || |||||||| || Sbjct 406718 TCGGGCGGGATGCCCTCCTTGTCCTG 406693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192528755311040