Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq148 774 0.0 >seq148 Length=122497 Score = 774 bits (858), Expect = 0.0 Identities = 769/993 (77%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 || ||| | ||||||||| || || || ||||| || |||||||||| || || | Sbjct 78886 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 78827 Query 163988 ATGATTCCCTGC-CTGCTGGCAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCC 164046 ||||| |||| | || | | || ||| | |||||| ||||| || |||| ||||| Sbjct 78826 ATGAT-CCCTACTCTTTTAACTGCAACTTCTGTTTTCATTATCGCGTTTATCGCGGCTCC 78768 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 |||||| || |||||||| ||||| || || || ||||||| | | || |||||||| Sbjct 78767 TCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAACAA 78708 Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166 ||||||| ||||||| |||| ||| | ||||||||||||||| | ||||||||||| || Sbjct 78707 CATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCAAT 78648 Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226 |||||||| ||| | | || || ||| | |||||||||||||||| |||||| | || Sbjct 78647 TTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGT 78588 Query 164227 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 164286 | |||||| | | || | | | |||||||||||||||| |||||| | |||| ||| Sbjct 78587 TTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTTCCG 78528 Query 164287 TCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346 | | ||||||||||| ||||| || || ||||| || || || |||||||| | || Sbjct 78527 TTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 78468 Query 164347 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 164406 || ||| | |||| || |||||||||||||||||||||| | |||||| | || || Sbjct 78467 TGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTAT 78408 Query 164407 CTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCC 164466 ||| || || ||||||| |||| | || ||||| |||||||||||||| || |||||||| Sbjct 78407 CTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCACCC 78348 Query 164467 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164526 ||||| ||||| || ||||| ||||| ||||| ||||| | ||| |||||||||||| Sbjct 78347 ATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 78288 Query 164527 TTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGG 164586 ||| || || |||||||| | ||||||| || || ||||| || || ||| | || Sbjct 78287 TTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGCTAACGAAGG 78228 Query 164587 TTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGG 164646 |||||| || ||||| ||||||||||| |||||||||||||| ||||| || ||||| || Sbjct 78227 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCGG 78168 Query 164647 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 164706 |||| | ||||||||||| ||||| ||||||||||| ||||| | ||||||||| | || Sbjct 78167 TCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 78108 Query 164707 AGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAA 164766 || ||||| ||||| ||||| ||||| |||||| | || || || ||||||||||| Sbjct 78107 TGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAA 78048 Query 164767 CCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164826 | | || ||||||||||||||||| || | | ||| || |||||||| ||||||| Sbjct 78047 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 77988 Query 164827 CTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGC 164886 ||||||||| || ||||||||||| | || |||||||| |||||||||||||| || Sbjct 77987 TTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGC 77928 Query 164887 TCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 |||||||||||| | || | |||| || ||| Sbjct 77927 TCACAACTTCCCATTAGATTTAGCTGTTGTTGA 77895 Score = 623 bits (690), Expect = 1e-173 Identities = 757/1028 (74%), Gaps = 10/1028 (1%) Strand=Plus/Plus Query 165147 GGTTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 165206 |||||||| ||||| |||| ||||||||| | |||||||||||||| || || ||| Sbjct 31637 GGTTGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGG 31696 Query 165207 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGAC 165265 || || || || || ||||| || || || ||||| || || |||||| | || || || Sbjct 31697 TCAGGG-TTATTATTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAAC 31755 Query 165266 TACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAA 165325 ||| || || || |||||||||||| || | ||| ||| ||| | || ||| || Sbjct 31756 TACATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAA 31815 Query 165326 CTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCT 165385 ||| | || || || || || |||||||| | ||||||||| ||| | | | || Sbjct 31816 CTTCTTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCTTTATTATTCCT 31875 Query 165386 ATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGAC 165445 ||||||||||| ||||||| || || | || ||||| ||| | || || || ||||| Sbjct 31876 TTGGGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGAC 31935 Query 165446 TTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACT 165505 ||||| || || ||||| | ||| | ||||| |||||||||||||| ||||||||| | Sbjct 31936 ATTTGTTGCCCTTCACGGGTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAAT 31995 Query 165506 GGCACGACTTATCGGTA----TTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTG 165561 ||||| || ||| ||||||| || || |||||||||||||| | ||||||| Sbjct 31996 TGCACGT----TCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTT 32051 Query 165562 CTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCAC 165621 ||||||||||| |||||| | || |||||| | |||||||| ||||| || || | Sbjct 32052 CTGTATTCGTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTC 32111 Query 165622 CGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACT 165681 | ||||| || || ||||| ||||||||| | | ||| ||||||| ||||| |||| Sbjct 32112 CTAGCTTCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACT 32171 Query 165682 GGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTT 165741 |||| | || || || || |||||||| ||||| ||| | | || | ||||| |||| Sbjct 32172 GGACTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTT 32231 Query 165742 CTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACA 165801 ||| ||||| |||| || ||||| || || | | |||||||||||| ||||||| Sbjct 32232 GTGCGATTCACGGTGCAACTGTAGAAAACACACTATTTGAAGATGGTGATGGTGCAAACA 32291 Query 165802 CTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACC 165861 | ||| || ||| | || |||| || ||||| ||||| ||||| || || || | Sbjct 32292 CATTCCGTGCGTTTAACCCAACACAGGCTGAAGAAACATATTCAATGGTTACGGCAAATC 32351 Query 165862 GTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTA 165921 |||||||||| || ||||||||| | ||||| || || |||||| | |||||||||| Sbjct 32352 GTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTA 32411 Query 165922 TGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCAC 165981 || | |||||||| || | || ||||||| ||| ||||||| | | ||| | || Sbjct 32412 TGTTATTTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGCGTTGTAGGTTTAGCTT 32471 Query 165982 TCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGT 166041 | ||| | ||||| |||||||| || || || || ||| | ||||| || ||||| || | Sbjct 32472 TAAATTTACGTGCATATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAAT 32531 Query 166042 TTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTC 166101 ||||||| |||||||| ||||| || || | || ||||| | ||||| ||| ||||| Sbjct 32532 TTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTG 32591 Query 166102 CTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACG 166161 || ||| || |||||||| || |||| |||||||| || || || ||| | || |||| Sbjct 32592 CTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACG 32651 Query 166162 CACTTTAA 166169 | |||||| Sbjct 32652 CTCTTTAA 32659 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 160906 CGGGGTGTAGCGCAGA--GGTAGCGCGGCTGTTTTGGGAACAGCAGGTCGCAGGTTCGAT 160963 |||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||| Sbjct 11994 CGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGAA 11935 Query 160964 CCCTGTCACCCCGA 160977 ||||||| ||||| Sbjct 11934 TCCTGTCATCCCGA 11921 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 160906 CGGGGTGTAGCGCAGA--GGTAGCGCGGCTGTTTTGGGAACAGCAGGTCGCAGGTTCGAT 160963 |||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||| Sbjct 116479 CGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGAA 116420 Query 160964 CCCTGTCACCCCGA 160977 ||||||| ||||| Sbjct 116419 TCCTGTCATCCCGA 116406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557653284691200