Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq148 778 0.0 seq149 84.2 3e-11 >seq148 Length=122497 Score = 778 bits (862), Expect = 0.0 Identities = 773/996 (78%), Gaps = 6/996 (1%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 || ||| | |||||||| ||| | || ||| | || |||||||||| ||||| | Sbjct 78886 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 78827 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGTTT-CATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| || | |||| || ||||||| ||| |||| || |||| ||||| Sbjct 78826 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTTTTCATTATCGCGTTTATCGCGGCTCC 78768 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 |||||| || ||||| || |||||||| || || ||||||| | | || || ||||| Sbjct 78767 TCCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAACAA 78708 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 |||||| ||||||| || ||||| | ||||||||||| ||| | |||||||| || || Sbjct 78707 CATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCAAT 78648 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 |||||||| || ||| | ||||||||| | ||||| |||||||||| |||||| | | Sbjct 78647 TTGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGT 78588 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | |||||| | | ||| | | | | |||||||||||||| |||||| | |||| ||| Sbjct 78587 TTGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTTCCG 78528 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 ||||||||||||| |||||| || || ||||| || ||||| || ||||| | || Sbjct 78527 TTTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 78468 Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076 ||||||| || | || || |||||||||||||||||||||||| |||||| | ||||| Sbjct 78467 TGTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTAT 78408 Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 178136 | || || ||||||| |||| | || |||||||| ||||||||||| || |||||||| Sbjct 78407 CTCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCACCC 78348 Query 178137 CTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196 ||||||||| | || || |||||||| ||||||||||| | ||| ||| |||||||| Sbjct 78347 ATTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 78288 Query 178197 TTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAG--AACTAT 178254 ||| || || ||||| || | |||||||||| || || |||||| |||| ||| | Sbjct 78287 TTCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAA--TCAGCTAACGAA 78230 Query 178255 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTC 178314 |||||||| ||||||||||||||||| || |||||||||||||| |||||||| |||||| Sbjct 78229 GGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTC 78170 Query 178315 GGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTC 178374 ||||| | || |||||||| || || ||||||||||| ||||| | ||||||||| | Sbjct 78169 GGTCGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 78110 Query 178375 GCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 178434 || || ||||| ||||| ||||| |||||||||||| | ||| || || ||||||||| Sbjct 78109 GCTGCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTC 78050 Query 178435 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAAC 178494 ||| | || ||||||||||||||||| || | | ||| || || || | ||| Sbjct 78049 AACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAAC 77990 Query 178495 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAAT 178554 || ||||||||| || ||||||||||| | ||||||||||| |||||||||||||| Sbjct 77989 ACTTGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAAC 77930 Query 178555 GCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 |||||||||||||| | || | |||| || |||| Sbjct 77929 GCTCACAACTTCCCATTAGATTTAGCTGTTGTTGAA 77894 Score = 623 bits (690), Expect = 1e-173 Identities = 764/1039 (74%), Gaps = 3/1039 (0%) Strand=Plus/Plus Query 178814 AACACTACAGAAACAAAGGGGGTGGTTTGATGTACTCGATGACTGGCTTAAGCGTGATCG 178873 || ||| ||||| || | || ||||||||||| | |||||||||||| ||||| || Sbjct 31619 AAAACTCAAGAAA-AACGCGGTTGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCG 31677 Query 178874 GTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGG 178933 |||||||| || || |||||||| | | | |||||||| || ||| | ||||| || Sbjct 31678 TTTCGTTTTCGTAGGATGGTCAGGGTTATTATTATTCCCTACAGCATACCTTGCACTAGG 31737 Query 178934 CGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTC 178993 |||||| |||| || || ||||| || || || ||||||||||| || | || ||||| Sbjct 31738 TGGTTGGTTCACAGGAACTACATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTC 31797 Query 178994 GTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGG 179053 ||| | || || || || ||| | || ||||||||||||||||| || | | | || Sbjct 31798 ATATTTAGAAGGTTGCAACTTCTTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGG 31857 Query 179054 ACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCA 179113 || || || | | || |||||||| |||||||| || ||||| || ||| || Sbjct 31858 TCACTCTTTATTATTCCTTTGGGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCA 31917 Query 179114 ACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCAT 179173 | | || || || ||| | ||||| || || ||||| | || |||| || |||||||| Sbjct 31918 ATTAGGTGGTCTTTGGACATTTGTTGCCCTTCACGGGTCTTTTTCTCTTATTGGTTTCAT 31977 Query 179174 GCTTCGGCAGTTTGAAATCGCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTT 179233 |||||| ||||||||||| |||||| ||| |||||||| || || || || || || Sbjct 31978 GCTTCGTCAGTTTGAAATTGCACGTTCAGTAAAAATTCGTCCATATAACGCTATTGCTTT 32037 Query 179234 TTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTC 179293 || | ||| ||| |||| || || |||||||| | || |||||| | ||||| || Sbjct 32038 CTCAGCTCCTATTTCTGTATTCGTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGG 32097 Query 179294 GTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACA 179353 ||||| ||||| || || || || || || |||||||| ||| | | ||| | || Sbjct 32098 TTGGTTTTTTGCTCCTAGCTTCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCA 32157 Query 179354 GGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGG 179413 ||||||||||||||||| | ||||| ||||| |||||||||||||| ||| | || || Sbjct 32158 AGGCTTCCACAACTGGACTTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGG 32217 Query 179414 CGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAG 179473 | ||||| |||||||| ||||| ||||| || ||||| |||||||| |||||||| | Sbjct 32218 TGCTGCATTACTTTGTGCGATTCACGGTGCAACTGTAGAAAACACACTATTTGAAGATGG 32277 Query 179474 TGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGAT 179533 ||| |||| |||||| || || | || ||||| | || || || ||||| || Sbjct 32278 TGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAGGCTGAAGAAACATATTCAAT 32337 Query 179534 GGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTG 179593 |||||| || || ||||||||||| || || |||||| | || || || || ||||| Sbjct 32338 GGTTACGGCAAATCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTG 32397 Query 179594 GCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTAT 179653 | |||| ||||||||||| |||||||| || | |||||||||| | ||||| | Sbjct 32398 GTTACACTTCTTTATGTTATTTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGCGT 32457 Query 179654 TATTGGTCTTGCACTTAACCTTA-GAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGG 179712 | | ||| | || |||| ||| | || ||||| || ||||||||||| || | || | Sbjct 32458 TGTAGGTTTAGC-TTTAAATTTACGTGCATATGATTTCGTTTCACAAGAAATTCGCGCTG 32516 Query 179713 CAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTAC 179772 | || |||||||| || || || |||||||| || || || || || || |||||| | | Sbjct 32517 CGGAAGATCCTGAATTTGAAACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTC 32576 Query 179773 GTGCTTGGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTAT 179832 ||||||||||||| | ||||| || |||||||| ||||||| ||||| || || | Sbjct 32577 GTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTT 32636 Query 179833 TGCCAAGAGGCAACGCTCT 179851 | ||| | || |||||||| Sbjct 32637 TACCACGTGGAAACGCTCT 32655 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 18366 TTAGGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTAC 18425 || |||| | || ||||||||||||||| || ||| ||||||||| |||||||||||||| Sbjct 9068 TTCGGGTCGATGCCCGAGTGGTTAATGGGGGTGGATTGTAAATCCACTGGCTCTGCCTAC 9127 Query 18426 GGGGGTTCAAATCCCTCCCTGCCCATAC 18453 | ||||||||||| | | ||||| || Sbjct 9128 GCTGGTTCAAATCCAGCTCGGCCCAAAC 9155 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 18366 TTAGGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTAC 18425 || |||| | || ||||||||||||||| || ||| ||||||||| |||||||||||||| Sbjct 113553 TTCGGGTCGATGCCCGAGTGGTTAATGGGGGTGGATTGTAAATCCACTGGCTCTGCCTAC 113612 Query 18426 GGGGGTTCAAATCCCTCCCTGCCCATAC 18453 | ||||||||||| | | ||||| || Sbjct 113613 GCTGGTTCAAATCCAGCTCGGCCCAAAC 113640 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 17858 AGGGGAATTAGCTCAGTTGGTAGAGCGCCTGC-TTTGCAAGCAGGATGTCAGCGGTTCGA 17916 |||||| ||||||||||||||||||| |||| |||||| | |||||||||||||||| Sbjct 49542 AGGGGATATAGCTCAGTTGGTAGAGCG-CTGCTTTTGCACGGCAGATGTCAGCGGTTCGA 49600 Query 17917 GTCCGCTATTCTCCA 17931 ||||||| |||||| Sbjct 49601 GTCCGCTTATCTCCA 49615 >seq149 Length=72121 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 158208 GGGTGTAGCTCAGTTTGGTAGAGCGCCGTCTTTGGGAGGCGGATGCCGTAGGTTCGAATC 158267 ||||||||| |||| |||||| |||| ||||||||| |||| |||||||||||||| Sbjct 6438 GGGTGTAGCGCAGTCTGGTAGCGCGCTTGCTTTGGGAGCAAGATGTCGTAGGTTCGAATC 6497 Query 158268 CTATCACCCCGACTTGGATAT 158288 ||||||||| || || |||| Sbjct 6498 CTATCACCCTGATTTTTATAT 6518 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 158208 GGGTGTAGCTCAGTTTGGTAGAGCGCCGTCTTTGGGAGGCGGATGCCGTAGGTTCGAATC 158267 ||||||||| |||| |||||| |||| ||||||||| |||| |||||||||||||| Sbjct 63069 GGGTGTAGCGCAGTCTGGTAGCGCGCTTGCTTTGGGAGCAAGATGTCGTAGGTTCGAATC 63128 Query 158268 CTATCACCCCGACTTGGATAT 158288 ||||||||| || || |||| Sbjct 63129 CTATCACCCTGATTTTTATAT 63149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596306007385600