Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq148 753 0.0 >seq148 Length=122497 Score = 753 bits (834), Expect = 0.0 Identities = 762/992 (77%), Gaps = 0/992 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 || ||| | |||||||| |||||| |||||| | || |||||||||| || || | Sbjct 78886 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 78827 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| || | | ||||| || |||||| ||||| || |||| ||||| Sbjct 78826 ATGATCCCTACTCTTTTAACTGCAACTTCTGTTTTCATTATCGCGTTTATCGCGGCTCCT 78767 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 ||||| || ||||| || ||||| || || || ||||||| | | || || |||||| Sbjct 78766 CCTGTTGATATCGATGGTATCCGTGAGCCTGTATCTGGTTCATTATTATACGGAAACAAC 78707 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 |||||| ||||||| || | || | || ||||| |||||| | |||||||| || || Sbjct 78706 ATCATCACTGGTGCAATTATTCCTACATCTAACGCTATCGGTTTACACTTCTACCCAATT 78647 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| ||| | | ||||| ||||| |||||||||||||||| |||||| | || Sbjct 78646 TGGGAAGCTGCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTT 78587 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | |||||| || | || | | | |||||||||||||||| |||||||| || | ||| Sbjct 78586 TGTCACTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAATGGGAATTATCTTTCCGT 78527 Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771 | |||||||| || |||||| ||||||||||| || || ||||| ||||| | ||| Sbjct 78526 TTAGGTATGCGTCCATGGATCGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 78467 Query 169772 GTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATC 169831 || ||| | ||||||| | || ||||| || |||||||||| ||||||| | |||||| Sbjct 78466 GTATTCATTATCTACCCACTCGGTCAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATC 78407 Query 169832 TCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCC 169891 || || || || |||| |||| | || |||||||||||||||||||| || |||||||| Sbjct 78406 TCAGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATTCTTATGCACCCA 78347 Query 169892 TTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGT 169951 ||||||||||||||||| || || || |||||||| || | || || ||||||||| Sbjct 78346 TTCCACATGCTTGGTGTAGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGGT 78287 Query 169952 AGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGT 170011 || || ||||| | | | |||||||| || || ||||| || ||| | ||| Sbjct 78286 TCACTTGTAACTTCTTCTTTAATTCGTGAAACTACTGAAAACGAATCAGCTAACGAAGGT 78227 Query 170012 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGT 170071 ||||| ||||||||||||||||| || |||||||||||||| ||||| || ||||||||| Sbjct 78226 TACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCATGGCTACTTCGGT 78167 Query 170072 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCA 170131 || | || |||||||| ||||| ||||||||||| |||||| | ||||||||| | || Sbjct 78166 CGTTTAATTTTCCAATATGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCT 78107 Query 170132 GCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAAC 170191 || ||||| |||||||| || |||||||| ||| | ||| | || || ||||| |||||| Sbjct 78106 GCTTGGCCAGTTGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAAC 78047 Query 170192 CTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACC 170251 | || ||||||||||||||||| || | | ||| || |||||||| ||||||| Sbjct 78046 TTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACACT 77987 Query 170252 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCT 170311 ||||||||| || ||||||||||| | || |||||||| |||||||||||||| ||| Sbjct 77986 TGGGCAGACATTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCT 77927 Query 170312 CACAACTTCCCTCTCGACCTCGCTGCTGCTGA 170343 ||||||||||| | || | |||| || ||| Sbjct 77926 CACAACTTCCCATTAGATTTAGCTGTTGTTGA 77895 Score = 565 bits (626), Expect = 3e-156 Identities = 742/1025 (72%), Gaps = 2/1025 (0%) Strand=Plus/Plus Query 170589 GGGTGGTTCGATGTCCTGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGG 170648 || ||||| ||||| | |||||||||||| ||||| || || || || || || ||| Sbjct 31637 GGTTGGTTTGATGTTGTTGATGACTGGCTTCGTCGTGACCGTTTCGTTTTCGTAGGATGG 31696 Query 170649 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCAC 170707 || || || || || ||||| || || || |||||| | || || ||| | || || || Sbjct 31697 TCAGG-GTTATTATTATTCCCTACAGCATACCTTGCACTAGGTGGTTGGTTCACAGGAAC 31755 Query 170708 GACATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAA 170767 |||||||| ||| |||||| || || || | || ||| || | |||||| || Sbjct 31756 TACATTTGTAACATCTTGGTATACTCATGGTTTAGCGTCTTCATATTTAGAAGGTTGCAA 31815 Query 170768 TTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACT 170827 ||| | ||||| ||||| ||||| || || || ||||||||| ||| | | | || Sbjct 31816 CTTCTTAACAGCTGCTGTATCAACTCCAGCGAATAGTATGGGTCACTCTTTATTATTCCT 31875 Query 170828 TTGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAA 170887 |||||||||||| |||| || ||||| || |||| ||| | || || || |||| Sbjct 31876 TTGGGGTCCTGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTCTTTGGAC 31935 Query 170888 TTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAAT 170947 ||||| || || ||||| | ||| |||| || |||||||||||||| ||||||||||| Sbjct 31936 ATTTGTTGCCCTTCACGGGTCTTTTTCTCTTATTGGTTTCATGCTTCGTCAGTTTGAAAT 31995 Query 170948 CAGTCGTCTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGT 171007 ||| ||| ||| | || || || || || |||||||| | |||||| |||| Sbjct 31996 TGCACGTTCAGTAAAAATTCGTCCATATAACGCTATTGCTTTCTCAGCTCCTATTTCTGT 32055 Query 171008 GTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTC 171067 || || || ||| | || |||||| | || || || ||||||| || || ||| Sbjct 32056 ATTCGTTTCTGTTTTCTTAATTTATCCTTTAGGACAATCTGGTTGGTTTTTTGCTCCTAG 32115 Query 171068 CTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGAC 171127 ||| || || || ||||| ||||| ||| | | ||| | ||||| |||||||||||||| Sbjct 32116 CTTCGGTGTAGCTGCAATTTTCCGATTCATTTTATTCTTCCAAGGCTTCCACAACTGGAC 32175 Query 171128 ACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGC 171187 | || || || |||||||||||||| || ||| | || || | |||||| |||| ||| Sbjct 32176 TTTAAACCCTTTCCATATGATGGGTGTAGCGGGTGTACTTGGTGCTGCATTACTTTGTGC 32235 Query 171188 AATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTT 171247 ||||| |||| || ||||| || || | | ||||||||||||| |||||||| || Sbjct 32236 GATTCACGGTGCAACTGTAGAAAACACACTATTTGAAGATGGTGATGGTGCAAACACATT 32295 Query 171248 TAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTT 171307 || ||| || | || |||| ||||| |||||||| ||||| || || |||||||| Sbjct 32296 CCGTGCGTTTAACCCAACACAGGCTGAAGAAACATATTCAATGGTTACGGCAAATCGTTT 32355 Query 171308 CTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCT 171367 |||||| || ||||||||| | || || || || |||||||| || ||||||||| | Sbjct 32356 CTGGTCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTCTTTATGTT 32415 Query 171368 GTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAA 171427 |||||||| || | ||||||||| | ||| | | || || | ||| | ||| | || Sbjct 32416 ATTTGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGCGTTGTAGGTTTAGCTTTAAA 32475 Query 171428 TCTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGA 171487 | | | || ||||||||||| || || | | || || |||||||| || || || Sbjct 32476 TTTACGTGCATATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAATTTGA 32535 Query 171488 GACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGT 171547 || |||||||| || || || || || || |||||| ||||||| |||||||| | Sbjct 32536 AACTTTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCA 32595 Query 171548 AGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACT 171607 ||| || || |||||||| |||| ||||| ||||| ||| |||| ||||| || || || Sbjct 32596 AGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCT 32655 Query 171608 TTGAT 171612 || || Sbjct 32656 TTAAT 32660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592197215603200