Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq115 127 4e-24 seq123 109 1e-18 seq35 100 6e-16 seq117 98.7 2e-15 seq129 96.9 7e-15 seq14 95.1 3e-14 seq112 89.7 1e-12 >seq115 Length=3126412 Score = 127 bits (140), Expect = 4e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| || |||| ||| || || |||| || | |||||| ||||||||||| || || Sbjct 977016 GGGAAGCCGTCCAGCTGGCCATTGGCAATGGCGCGCATCAGGGTCGACTTGCCGGCGCCG 977075 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148 ||||||||||| || || || || | || |||||| | | || | ||||||||| Sbjct 977076 TTGGGGCCGCACAGGCCGTAGCGCTGGCCGCGCTTCAGGTGCAGGCGCGCGTTGTTCAGC 977135 Query 317149 AGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201 || ||||| |||||||| ||||| |||||||| || | ||||||||||| || Sbjct 977136 AGGATCTTGCCACCATAGGCCAGGGAGAACTCGCAGTTGCACAGGTCCTCACC 977188 Score = 114 bits (126), Expect = 3e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 316167 GTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATC 316226 ||| || |||| || |||||||| ||||||||||| ||||| |||||||| || || | Sbjct 975103 GTCCTCGCCGGTGGCGTAACGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTT 975162 Query 316227 CTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 316286 ||| ||||||||||| |||||||| |||||||| || | |||| || || |||||||| Sbjct 975163 CTCAATGTGGTGGAACGCGTGCTGCGCCACGTACGCGACGCGCAGGTTGGGGTGCTTCCA 975222 Query 316287 AAC 316289 || Sbjct 975223 CAC 975225 Score = 91.5 bits (100), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 317568 CAACTTTGCCATGTTCCGGATGATGATACACGTCTTCCGACGTACGGGGGTGGTGCGATC 317627 || ||| |||||||| |||||||| | || | ||| || || | |||||||||||| || Sbjct 978292 CACCTTGGCCATGTTGCGGATGATCACGCAGGCCTTACGGCGGATGGGGGTGGTGCGGTC 978351 Query 317628 GGCGAGACCGCGGACGAGTAGTGGGGTCAAGATAGACAGGGTCTTCGCATCGACCGACTG 317687 || |||||||| || || || || || ||| |||||||| |||||| |||||||| Sbjct 978352 GGTCAGACCGCGCACCAGCAGGGGCACCAGGATGGACAGGGTGCGCGCATCCACCGACTG 978411 >seq123 Length=4192086 Score = 109 bits (120), Expect = 1e-18 Identities = 79/90 (88%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 168632 ACACTCGCCATAGCTCAGTTGGAAGAGCACCGGACTGTAAAGTAAAACAT-TCATCCGTA 168690 |||||| ||||||||||||||||||||| ||||||||| | | ||| | | |||| || Sbjct 3385992 ACACTCACCATAGCTCAGTTGGAAGAGCGAAGGACTGTAATGCACAACTTGTTATCCTTA 3386051 Query 168691 GGTCCCCCGTTCGAACCGGGGTGGTGAGAC 168720 |||||||||||||||||||||||||||||| Sbjct 3386052 GGTCCCCCGTTCGAACCGGGGTGGTGAGAC 3386081 >seq35 Length=2876677 Score = 100 bits (110), Expect = 6e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| |||||||| || || || | || || |||||||||| || || || Sbjct 2472247 ACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCCGAAGACTCCACCTC 2472188 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 2472187 GAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2472143 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || ||||||||||||||||| Sbjct 2472716 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGCC 2472657 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||||||||||| ||||| || || || ||||| ||||||| || || |||||| Sbjct 2472656 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCA 2472603 >seq117 Length=2441637 Score = 98.7 bits (108), Expect = 2e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 168745 ATGACGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAAT 168804 ||| || | |||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 2226234 ATGTCGCAATAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGGCCGGGGTTCGAT 2226175 Query 168805 TCCCCGATTCGTCG 168818 |||||| | || || Sbjct 2226174 TCCCCGTTGCGGCG 2226161 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| || ||||||||||| ||||| || || || || |||||||| Sbjct 1798842 TTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATG 1798901 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 | || || ||||| ||| || ||||||||||| || Sbjct 1798902 AGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 1798939 >seq129 Length=1902424 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 168746 TGACGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATT 168805 || || | |||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 924023 TGTCGCAATAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGGCCGGGGTTCGATT 923964 Query 168806 CCCCGATTCGTCG 168818 ||||| | || || Sbjct 923963 CCCCGTTGCGGCG 923951 >seq14 Length=1676047 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| |||||||| || || || | ||||| |||||||| | || || || Sbjct 503580 ACCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAGGACTCCACCTC 503639 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 503640 GAGGGTGATGGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 503684 >seq112 Length=2452761 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || |||||||| ||||| || Sbjct 1009580 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCG 1009639 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||| ||||| || || || || || ||||| | || || ||||| ||| Sbjct 1009640 AGCGTACGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGA 1009699 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 1009700 ATGCCCTCCTTGTCCTG 1009716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737054184640