Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20sorokiniana_20[genbank_20GCA_5F002245835.1_202017-08-10] 160 sequences; 59,568,085 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq35 93.3 3e-14 seq112 86.0 5e-12 seq138 84.2 2e-11 >seq35 Length=2876677 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | || ||||||||| ||||| |||||| ||||||||||| || Sbjct 2472719 ATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCA 2472660 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || ||| |||| ||||||||||| ||||| ||||||| |||||||| || Sbjct 2472659 GCCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 2472604 >seq112 Length=2452761 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| || ||| |||||| |||||||| || |||||| Sbjct 1009580 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCG 1009639 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || |||| ||||||||||| || || ||||| | |||||||| || | || Sbjct 1009640 AGCGTACGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGA 1009699 Query 44231 ACACCTTCCTTTTCC 44245 | || ||||| ||| Sbjct 1009700 ATGCCCTCCTTGTCC 1009714 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||| |||||| |||||||| || || Sbjct 1012246 CATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTC 1012305 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||||| || |||| ||||||||||| || || ||||| | |||||||| || Sbjct 1012306 GGCGAGGGTACGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTC 1012362 >seq138 Length=2592956 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| |||||| |||||| || ||||| ||||| Sbjct 406361 CATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGAATGTTATAATC 406302 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| | || |||| ||||||||||| || || ||||| | |||||||| || | Sbjct 406301 GGCCAAGGTCCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGG 406242 Query 44227 AGGCACACCTTCCTTTTCC 44245 || | || ||||| ||| Sbjct 406241 CGGGATGCCCTCCTTGTCC 406223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989698018720