Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq12 181 2e-40 seq8 104 5e-17 seq1 91.5 3e-13 >seq12 Length=1469606 Score = 181 bits (200), Expect = 2e-40 Identities = 246/343 (72%), Gaps = 0/343 (0%) Strand=Plus/Minus Query 319319 CCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGT 319378 |||| ||||| ||||||||||| | |||| |||| | |||| |||| ||||| Sbjct 587646 CCTCCAGGAAGCCGGGCTCGGGCAGGGACCACTTGGTGGAGGCGTCGGCCAGGGAGTAGT 587587 Query 319379 AACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCA 319438 | || | ||||| |||| || ||| |||| |||||| || ||| ||||||||| | Sbjct 587586 AGGCGGCGGCCTCGGGGCGCTGCTGCACAAACTTGGACAGGTTGCCCAGGTACTTCTTGA 587527 Query 319439 GCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGT 319498 |||| | ||| ||||| ||||| || |||| ||| || ||||| ||||| || |||| Sbjct 587526 GCTTGAAGTTGTCCTCGTAGTGGATGATGGAGGAGCAGACGGCGTCCAGGAAGCCCGAGT 587467 Query 319499 CGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACC 319558 |||| || || | ||| | | ||| |||| ||| | |||||| | |||| |||| Sbjct 587466 CGTGGGAGACGACCACCGAGGTGACGCCCTTGAGGCCCACCAGGTAGTTGATCAGCCACT 587407 Query 319559 TCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCA 319618 |||||| | ||| ||||||||||| ||||| || || |||| | | ||||||| Sbjct 587406 GCACGTTGGTCACGTCCAGATGGTTGGTGGGCTCATCCAGCAGCATGATGTCGGCGTTCA 587347 Query 319619 GGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCC 319661 |||||| || || || || || || ||||| ||||| || || Sbjct 587346 TGAGCATGGCCCGCGCCAGGGCCAGCTTCATCTTCCAGCCGCC 587304 Score = 127 bits (140), Expect = 4e-24 Identities = 228/330 (69%), Gaps = 5/330 (2%) Strand=Plus/Minus Query 320401 TTCGCCATGTTCCTGATGATAACACATGTCTTACGCCGAACGGGGGTGGTGCGATCGGCA 320460 || |||||||| | |||||| || || | ||| || || | ||| |||||||| |||| Sbjct 585468 TTGGCCATGTTGCGGATGATGACGCACGCCTTGCGGCGGATGGGCGTGGTGCGGTCGGTC 585409 Query 320461 AGCCCGCGGACGAGTAGCGGGGTCAGGATAGACAGGGTCTTCGCGTCAACCGACTGGACG 320520 || ||||| ||||| || || |||||| ||||| || |||||| ||||||||||| Sbjct 585408 AGGCCGCGCACGAGCAGGGGCACCAGGATGGACAGAGTGCGCGCGTCCACCGACTGGACA 585349 Query 320521 AACGTGGTCGCAGATAGGTTGTGGACACACTCGGGGACGTC-CTGAGGAGAACCAATACT 320579 |||||||| ||||| || ||||| || || ||||| || || ||| || | || || | Sbjct 585348 AACGTGGTGGCAGAGAGCTTGTGCACGCAGTCGGGCACCTCGCTG-GGGGCGCCGATGCA 585290 Query 320580 CTTCACGAGATGGGGAATGAAGGGTTCGATGTCTTTGTTATCAAT---TTGACAACACGC 320636 | || ||||| | ||||| || ||||| ||| |||| || ||| Sbjct 585289 GCGGATCAGGTGGGGCACAAAGGGCTCAATGTCGCGGTTGCCAATGGCGGCGCAGCACTT 585230 Query 320637 GATAAGAGCCTTCGTGGCACTGTCCTTTACCACTTGCTTCAGGTCAATCATACAATCTGT 320696 | | || || | ||||| | | || |||| ||||| | ||| || | || Sbjct 585229 GGTCAGGGCGTCGGTGGCGGCGGCGCGCACGGTGGGCTTGAGGTCCACCATGCAGTTGGT 585170 Query 320697 CACCACCGGTACAATTTCGGGAAGGTAGAC 320726 |||||| || ||||| ||||| |||||||| Sbjct 585169 CACCACGGGCACAATCTCGGGCAGGTAGAC 585140 Score = 114 bits (126), Expect = 3e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055 ||| || |||| |||||| ||||| ||||| ||||||||||| |||||||| || || | Sbjct 588314 GTCCTCGCCGGTGGCATAGCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTT 588255 Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115 ||| ||||||||||| || ||||| |||||||| || | |||| || || |||||||| Sbjct 588254 CTCAATGTGGTGGAAGGCGTGCTGCGCCACGTAGGCGACGCGCAGGTTGGGGTGCTTCCA 588195 Query 319116 AAC 319118 || Sbjct 588194 CAC 588192 >seq8 Length=1782911 Score = 104 bits (114), Expect = 5e-17 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 165910 TGACGATCCCTTAGCTCAGTTGGAAGAGTTTTTGCCTAACACGCAGAAGGTCGCAGGATC 165969 || ||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||| Sbjct 298482 TGGCGATCCCTTAGCTCAGT-GGAAGAGCATCTGCTTAACACGCAGAAGGTCGCAGGATC 298424 Query 165970 GAAACCTGCAGGGATCATATTTTGTAT 165996 || ||||||||||||| ||||| || Sbjct 298423 AAAGCCTGCAGGGATCACGTTTTGGAT 298397 >seq1 Length=3119887 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 2024346 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2024405 Query 165770 CCCACGATGGGCA 165782 ||||| |||||| Sbjct 2024406 CCCACATTGGGCA 2024418 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACGA 165776 |||||||||||||||||||| || || |||| || ||||||||||||||||||||||| Sbjct 1990596 TAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACAT 1990537 Query 165777 TGGGCA 165782 |||||| Sbjct 1990536 TGGGCA 1990531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057818388904820