Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 141 1e-28 seq4 129 6e-25 seq7 127 2e-24 seq13 122 9e-23 seq16 120 3e-22 >seq3 Length=2414369 Score = 141 bits (156), Expect = 1e-28 Identities = 131/166 (79%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 ||||||||| | || || ||| ||| |||||| ||||||| || ||| ||| | || Sbjct 916051 GAGCGCCTGATTGCGTTTGCGTGCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 915992 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || || ||||||||||| ||||| |||||||||||||| || ||| |||||| |||||| Sbjct 915991 ATCTTCTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCACCTTCTCCAACGAACTCATC 915932 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 || | |||||||| ||||| |||||||||||| |||||| || Sbjct 915931 TCGCGCGACGAGGGACTGCACACCGACTTTGCCTGCCTGCTGTACA 915886 Score = 127 bits (140), Expect = 2e-24 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || || ||| |||||||| |||||||| Sbjct 739620 GACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTGGTCTTTGCGGGCAAGCAGCTGGAG 739679 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| |||||||||||||||||||||| |||| ||||| || ||| || Sbjct 739680 GATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 739739 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 739740 CGCCTGCGCGGCGGC 739754 Score = 122 bits (134), Expect = 9e-23 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || ||||||||||| | |||||||| ||| | || | |||||||| |||||||| Sbjct 739154 GATAAGGAGGGCATCCCGCCTGACCAGCAGCGATTGATTTTTGCGGGCAAGCAGCTGGAA 739213 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| |||||||| ||||||||| |||||||||||| |||| ||||| || ||| || Sbjct 739214 GACGGCCGCACCCTGGCCGACTACAATATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 739273 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 739274 CGCCTGCGTGGCGGC 739288 Score = 118 bits (130), Expect = 1e-21 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 116681 GAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGC 116740 |||||||| ||||| || ||| | ||||||||||| ||| |||| |||||||| Sbjct 916801 GAGGAGGTCGACCTCGGCAGCGACGTCAAGGACTGGGAGCGGCTGAGCGACGACGAGCGC 916742 Query 116741 CATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAAT 116800 || || | ||||| || ||||| ||||||||| |||||||||||||||||||| Sbjct 916741 CACTTTGTGTCACACGTCCTCGCCTTCTTCGCCGCCTCTGACGGCATCGTCAACGAGAAC 916682 Query 116801 CTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGG 116840 |||| | ||| ||| ||||||||||||||| | |||| Sbjct 916681 CTGGGGGCGCGCTTCATGCAGGAGGTGCAGGTGCCAGAGG 916642 >seq4 Length=2291561 Score = 129 bits (142), Expect = 6e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| | |||||||| || || |||| ||||||||| |||||||| |||| ||| Sbjct 1795885 GGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGC 1795826 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| |||| ||||| || ||| ||||| || | Sbjct 1795825 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGC 1795766 Query 40912 GGCGGC 40917 |||||| Sbjct 1795765 GGCGGC 1795760 >seq7 Length=1828856 Score = 127 bits (140), Expect = 2e-24 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || || |||| |||||||| ||||| || Sbjct 864896 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAG 864837 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| ||||||||||||||||||||| |||| ||||| || ||| || Sbjct 864836 GATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 864777 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 864776 CGCCTGCGCGGCGGC 864762 Score = 127 bits (140), Expect = 2e-24 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || || |||| |||||||| ||||| || Sbjct 865399 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAG 865340 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| ||||||||||||||||||||| |||| ||||| || ||| || Sbjct 865339 GATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 865280 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 865279 CGCCTGCGCGGCGGC 865265 Score = 127 bits (140), Expect = 2e-24 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || || |||| |||||||| ||||| || Sbjct 865902 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAG 865843 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| ||||||||||||||||||||| |||| ||||| || ||| || Sbjct 865842 GATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 865783 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 865782 CGCCTGCGCGGCGGC 865768 Score = 127 bits (140), Expect = 2e-24 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || || |||| |||||||| ||||| || Sbjct 870900 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAG 870841 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| ||||||||||||||||||||| |||| ||||| || ||| || Sbjct 870840 GATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 870781 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 870780 CGCCTGCGCGGCGGC 870766 Score = 127 bits (140), Expect = 2e-24 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || || |||| |||||||| ||||| || Sbjct 871403 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAG 871344 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| ||||||||||||||||||||| |||| ||||| || ||| || Sbjct 871343 GATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 871284 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 871283 CGCCTGCGCGGCGGC 871269 Score = 127 bits (140), Expect = 2e-24 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || || |||| |||||||| ||||| || Sbjct 871906 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAG 871847 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| ||||||||||||||||||||| |||| ||||| || ||| || Sbjct 871846 GATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 871787 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 871786 CGCCTGCGCGGCGGC 871772 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| |||||||| ||||| || || | ||| Sbjct 866396 GGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAGGATGGCCGC 866337 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| |||| ||||| || ||| ||||| || | Sbjct 866336 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGC 866277 Query 40912 GGCGGC 40917 |||||| Sbjct 866276 GGCGGC 866271 >seq13 Length=1343205 Score = 122 bits (134), Expect = 9e-23 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| ||||| | |||||||| || || || | |||||||| |||||||| Sbjct 880745 GACAAGGAGGGGATCCCGCCCGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAG 880686 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| |||||||||||||||||||||| |||| ||||| || ||| || Sbjct 880685 GATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 880626 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 880625 CGCCTGCGCGGCGGC 880611 >seq16 Length=1197677 Score = 120 bits (132), Expect = 3e-22 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| | |||||||| || || |||| |||||||| |||||||| || | | | Sbjct 458086 GGCATCCCGCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCAC 458145 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| |||| ||||| || ||| ||||| || | Sbjct 458146 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGC 458205 Query 40912 GGCGGCGGC 40920 ||||||||| Sbjct 458206 GGCGGCGGC 458214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216533740640