Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 2e-13 seq3 91.5 2e-13 seq13 87.8 2e-12 seq4 86.0 7e-12 >seq7 Length=1828856 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| |||||||| || || | Sbjct 864775 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA 864834 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||||| || | || ||||||| Sbjct 864835 TCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 864894 Query 43089 TCC 43091 ||| Sbjct 864895 TCC 864897 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| |||||||| || || | Sbjct 865278 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA 865337 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||||| || | || ||||||| Sbjct 865338 TCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 865397 Query 43089 TCC 43091 ||| Sbjct 865398 TCC 865400 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| |||||||| || || | Sbjct 865781 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA 865840 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||||| || | || ||||||| Sbjct 865841 TCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 865900 Query 43089 TCC 43091 ||| Sbjct 865901 TCC 865903 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| |||||||| || || | Sbjct 870779 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA 870838 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||||| || | || ||||||| Sbjct 870839 TCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 870898 Query 43089 TCC 43091 ||| Sbjct 870899 TCC 870901 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| |||||||| || || | Sbjct 871282 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA 871341 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||||| || | || ||||||| Sbjct 871342 TCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 871401 Query 43089 TCC 43091 ||| Sbjct 871402 TCC 871404 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| |||||||| || || | Sbjct 871785 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA 871844 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||||| || | || ||||||| Sbjct 871845 TCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 871904 Query 43089 TCC 43091 ||| Sbjct 871905 TCC 871907 >seq3 Length=2414369 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || |||||||| || ||||| || || || Sbjct 739275 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCG 739216 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || | |||||||||||| | ||| | || |||||| Sbjct 739215 TCTTCCAGCTGCTTGCCCGCAAAAATCAATCGCTGCTGGTCAGGCGGGATGCCCTCCTTA 739156 Query 43089 TCC 43091 ||| Sbjct 739155 TCC 739153 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| || ||||| || || | Sbjct 739741 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 739682 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || | || ||||||||||| | ||| | || ||||||| Sbjct 739681 TCCTCCAGCTGCTTGCCCGCAAAGACCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTG 739622 Query 43089 TCC 43091 ||| Sbjct 739621 TCC 739619 >seq13 Length=1343205 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| || ||||| || || | Sbjct 880624 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 880683 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||||| ||| | | ||||||| Sbjct 880684 TCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCGGGCGGGATCCCCTCCTTG 880743 Query 43089 TCC 43091 ||| Sbjct 880744 TCC 880746 >seq4 Length=2291561 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| || ||||| || || || Sbjct 1795773 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCG 1795832 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || |||||||| || ||||| || || ||||||||||||| ||| Sbjct 1795833 TCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGG 1795879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571814640843920