Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq13 89.7 4e-13 seq4 84.2 2e-11 seq16 82.4 6e-11 >seq13 Length=1343205 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| |||||||||||| ||| ||| | || ||| Sbjct 880630 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCC 880689 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || || |||| ||||| |||||||| || | |||||||||||| Sbjct 880690 AGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCC 880746 >seq4 Length=2291561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||||||||| |||||||||||| ||| ||| |||| ||| Sbjct 1795779 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCC 1795838 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || || || ||||| |||| ||||| |||||||| || Sbjct 1795839 AGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGG 1795879 >seq16 Length=1197677 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 45224 GGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCC 45283 || ||| |||||||||||||| || || ||| || | | | |||||| | | | Sbjct 457943 GGCGGCTCACCCTCCTTGTCCTGGATCTTGCTCTTCACATTCTCGATGCTGTCGCTGCTC 457884 Query 45284 TCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| | || || |||||||||||||| |||||||| ||||||||||| Sbjct 457883 TCCACCTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATTTGCAT 457831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073206598694