Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq28 100 4e-17 seq12 96.9 5e-16 seq11 91.5 2e-14 >seq28 Length=524499 Score = 100 bits (110), Expect = 4e-17 Identities = 168/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 99435 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCTGCCAT 99376 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || |||||||| || || || |||| || |||| Sbjct 99375 CCGCCGCCTGGCCCGCCGTGGCGGCGTCAAGCGCATCAGCGGTCTGATCTACGAGGAGAC 99316 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || || | ||| ||||| Sbjct 99315 CCGGGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCGGTGACCTACACCGA 99256 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || |||||||||||| || | || | || || || | || || || || Sbjct 99255 GCACGCCCGCCGCAAGACTGTCACCGCCTTTGACGTGGTGTACGCCCTCAAGCGCCAGGG 99196 Query 16672 CCG 16674 ||| Sbjct 99195 CCG 99193 Score = 96.9 bits (106), Expect = 5e-16 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 5608 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 5549 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || |||||||| || || || |||| || |||| Sbjct 5548 CCGCCGCCTGGCCCGCCGTGGCGGCGTCAAGCGCATCAGCGGCCTGATCTACGAGGAGAC 5489 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || || | ||| ||||| Sbjct 5488 CCGGGGCGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCGGTGACCTACACCGA 5429 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | || | || || || | || || || || Sbjct 5428 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 5369 Query 16672 CCG 16674 ||| Sbjct 5368 CCG 5366 >seq12 Length=1469606 Score = 96.9 bits (106), Expect = 5e-16 Identities = 178/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 777535 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 777594 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || |||||||| || || || |||| || |||| Sbjct 777595 CCGCCGCCTGGCCCGCCGTGGCGGCGTCAAGCGCATCAGCGGCCTGATCTACGAGGAGAC 777654 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || || | ||| ||||| Sbjct 777655 CCGCGGCGTGCTCAAGGTGTTCCTTGAGAACGTGGTGCGCGACGCGGTGACCTACACCGA 777714 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | || | || || || | || || || || Sbjct 777715 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGACGTGGTGTACGCCCTCAAGCGCCAGGG 777774 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | ||||| || || Sbjct 777775 CCGCACCCTGTATGGCTTCGG 777795 >seq11 Length=1554270 Score = 91.5 bits (100), Expect = 2e-14 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 709893 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 709834 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || |||||||| || || || |||| || |||| Sbjct 709833 CCGCCGCCTGGCCCGCCGTGGCGGCGTCAAGCGCATCAGCGGCCTGATCTACGAGGAGAC 709774 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || | | ||| ||||| Sbjct 709773 CCGGGGCGTGCTCAAGGTGTTCCTTGAGAACGTGGTGCGCGACTCGGTGACCTACACCGA 709714 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | || | || || || | || || || || Sbjct 709713 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGACGTGGTGTACGCGCTCAAGCGCCAGGG 709654 Query 16672 CCG 16674 ||| Sbjct 709653 CCG 709651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074821476902