Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4 109 5e-19 seq13 100 3e-16 seq7 100 3e-16 seq3 100 3e-16 seq16 95.1 1e-14 >seq4 Length=2291561 Score = 109 bits (120), Expect = 5e-19 Identities = 104/132 (79%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| Sbjct 1795755 ATGATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAG 1795814 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 ||| || |||||| |||||| ||||||||||| ||| |||| | ||||||||||| Sbjct 1795815 TCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCG 1795874 Query 131122 GGAGGGATTCCT 131133 || ||||| ||| Sbjct 1795875 GGCGGGATGCCT 1795886 >seq13 Length=1343205 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 880611 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 880670 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || | || | ||||||||||| || || Sbjct 880671 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCGGGCGG 880730 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 880731 GATCCCCTCCTTGTC 880745 >seq7 Length=1828856 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| || Sbjct 864762 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 864821 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 864822 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGG 864881 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 864882 GATGCCCTCCTTGTC 864896 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| || Sbjct 865265 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 865324 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 865325 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGG 865384 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 865385 GATGCCCTCCTTGTC 865399 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| || Sbjct 865768 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 865827 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 865828 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGG 865887 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 865888 GATGCCCTCCTTGTC 865902 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| || Sbjct 870766 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 870825 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 870826 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGG 870885 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 870886 GATGCCCTCCTTGTC 870900 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| || Sbjct 871269 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 871328 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 871329 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGG 871388 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 871389 GATGCCCTCCTTGTC 871403 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| || Sbjct 871772 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 871831 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 871832 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGG 871891 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 871892 GATGCCCTCCTTGTC 871906 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| || Sbjct 866271 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 866330 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 866331 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGG 866390 Query 131127 GATTCCT 131133 ||| ||| Sbjct 866391 GATGCCT 866397 >seq3 Length=2414369 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 739754 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 739695 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || ||| | ||||||||||| || || Sbjct 739694 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGACCAGGCGCTGCTGGTCAGGCGG 739635 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 739634 GATGCCCTCCTTGTC 739620 Score = 93.3 bits (102), Expect = 4e-14 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 ||| | ||||| || | || |||||| ||||||||| |||| || || ||| || Sbjct 916057 TTCTCGGAGCGCCTGATTGCGTTTGCGTGCGTGGAGGGCATCTTCTTCTCCGGCTCCTTC 915998 Query 46207 GCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265 | ||||||| | |||| || | || | ||||||||||||| || || |||||| Sbjct 915997 TGCTCCATCTTCTGGCTCAAGAAGCGCGGAC-TCATGCCCGGCCTCACCTTCTCCAACGA 915939 Query 46266 GCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 || || |||||||||||||| ||||| || |||||||| || || Sbjct 915938 ACTCATCTCGCGCGACGAGGGACTGCACACCGACTTTGCCTGCCT 915894 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| |||||||| | || | ||| |||||||| || || ||||| ||| Sbjct 739288 GCCGCCACGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGC 739229 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || ||||||||||| || | || || ||||||||||| || || Sbjct 739228 CAGGGTGCGGCCGTCTTCCAGCTGCTTGCCCGCAAAAATCAATCGCTGCTGGTCAGGCGG 739169 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || || || Sbjct 739168 GATGCCCTCCTTATC 739154 >seq16 Length=1197677 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 458211 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 458152 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||| | ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 458151 CAGGGTGTGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGG 458092 Query 131127 GATTCCT 131133 ||| ||| Sbjct 458091 GATGCCT 458085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010357333760