Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 8e-16 seq16 96.9 3e-15 seq3 93.3 3e-14 seq4 91.5 1e-13 seq7 89.7 4e-13 >seq13 Length=1343205 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||||||| Sbjct 880612 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 880671 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||| || ||||||||| |||| || ||||| ||||| || Sbjct 880672 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCGGGCGGG 880731 Query 16829 ACGCCCTCTTTGTC 16842 | ||||| ||||| Sbjct 880732 ATCCCCTCCTTGTC 880745 >seq16 Length=1197677 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||||||| Sbjct 458210 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 458151 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | ||| | | | ||||||| || ||||||||| | || || ||||| ||||| Sbjct 458150 AGGGTGTGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 458098 >seq3 Length=2414369 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||||||| Sbjct 739753 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 739694 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||| || ||||||||| | | || ||||| ||||| || Sbjct 739693 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGACCAGGCGCTGCTGGTCAGGCGGG 739634 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 739633 ATGCCCTCCTTGTC 739620 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || || |||||||||||| Sbjct 739287 CCGCCACGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGCC 739228 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| |||| || ||||||||| |||| | ||||| ||||| || Sbjct 739227 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCCGCAAAAATCAATCGCTGCTGGTCAGGCGGG 739168 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| || || Sbjct 739167 ATGCCCTCCTTATC 739154 >seq4 Length=2291561 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||||||| Sbjct 1795761 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 1795820 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | ||| | ||||||||| || |||||||| | || || ||||| ||||| Sbjct 1795821 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTC 1795873 >seq7 Length=1828856 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 864763 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 864822 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || ||||||||| | || || ||||| ||||| || Sbjct 864823 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 864882 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 864883 ATGCCCTCCTTGTC 864896 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 865266 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 865325 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || ||||||||| | || || ||||| ||||| || Sbjct 865326 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 865385 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 865386 ATGCCCTCCTTGTC 865399 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 865769 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 865828 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || ||||||||| | || || ||||| ||||| || Sbjct 865829 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 865888 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 865889 ATGCCCTCCTTGTC 865902 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 870767 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 870826 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || ||||||||| | || || ||||| ||||| || Sbjct 870827 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 870886 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 870887 ATGCCCTCCTTGTC 870900 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 871270 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 871329 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || ||||||||| | || || ||||| ||||| || Sbjct 871330 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 871389 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 871390 ATGCCCTCCTTGTC 871403 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 871773 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 871832 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || ||||||||| | || || ||||| ||||| || Sbjct 871833 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 871892 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 871893 ATGCCCTCCTTGTC 871906 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||| ||| Sbjct 866272 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 866331 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | ||| | | ||||| | || ||||||||| | || || ||||| ||||| Sbjct 866332 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 866384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405085956077860