Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 1e-14 seq7 89.7 4e-13 seq3 86.0 5e-12 >seq13 Length=1343205 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 || ||||||||||| || || ||||| || || || || || ||||| ||||| ||| | Sbjct 880748 CAGGACAAGGAGGGGATCCCGCCCGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTG 880689 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||| ||||||| | |||| |||||||| || || || |||||| | || | || Sbjct 880688 GAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 880629 Query 22429 TTGCGATTGCGCGGAGG 22445 |||| ||||||| || Sbjct 880628 CTGCGCCTGCGCGGCGG 880612 >seq7 Length=1828856 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 || ||||||||||| || || ||||| || || || || || ||||| ||||| ||| | Sbjct 864899 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTT 864840 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||| ||||||| | | || |||||||| || || || |||||| | || | || Sbjct 864839 GAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 864780 Query 22429 TTGCGATTGCGCGGAGG 22445 |||| ||||||| || Sbjct 864779 CTGCGCCTGCGCGGCGG 864763 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 || ||||||||||| || || ||||| || || || || || ||||| ||||| ||| | Sbjct 865402 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTT 865343 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||| ||||||| | | || |||||||| || || || |||||| | || | || Sbjct 865342 GAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 865283 Query 22429 TTGCGATTGCGCGGAGG 22445 |||| ||||||| || Sbjct 865282 CTGCGCCTGCGCGGCGG 865266 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 || ||||||||||| || || ||||| || || || || || ||||| ||||| ||| | Sbjct 865905 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTT 865846 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||| ||||||| | | || |||||||| || || || |||||| | || | || Sbjct 865845 GAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 865786 Query 22429 TTGCGATTGCGCGGAGG 22445 |||| ||||||| || Sbjct 865785 CTGCGCCTGCGCGGCGG 865769 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 || ||||||||||| || || ||||| || || || || || ||||| ||||| ||| | Sbjct 870903 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTT 870844 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||| ||||||| | | || |||||||| || || || |||||| | || | || Sbjct 870843 GAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 870784 Query 22429 TTGCGATTGCGCGGAGG 22445 |||| ||||||| || Sbjct 870783 CTGCGCCTGCGCGGCGG 870767 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 || ||||||||||| || || ||||| || || || || || ||||| ||||| ||| | Sbjct 871406 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTT 871347 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||| ||||||| | | || |||||||| || || || |||||| | || | || Sbjct 871346 GAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 871287 Query 22429 TTGCGATTGCGCGGAGG 22445 |||| ||||||| || Sbjct 871286 CTGCGCCTGCGCGGCGG 871270 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 || ||||||||||| || || ||||| || || || || || ||||| ||||| ||| | Sbjct 871909 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTT 871850 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||| ||||||| | | || |||||||| || || || |||||| | || | || Sbjct 871849 GAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 871790 Query 22429 TTGCGATTGCGCGGAGG 22445 |||| ||||||| || Sbjct 871789 CTGCGCCTGCGCGGCGG 871773 >seq3 Length=2414369 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 || || ||||||||||| || || || || || || || || | ||||| ||||| ||| Sbjct 739614 ATGCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTGGTCTTTGCGGGCAAGCAG 739673 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 | |||||| ||||||| | |||| |||||||| || || || |||||| | || | Sbjct 739674 CTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTG 739733 Query 22426 GTTTTGCGATTGCGCGGAGG 22445 || |||| ||||||| || Sbjct 739734 GTGCTGCGCCTGCGCGGCGG 739753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725882209910