Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq12 178 3e-39 seq1 109 1e-18 seq3 87.8 4e-12 >seq12 Length=1469606 Score = 178 bits (196), Expect = 3e-39 Identities = 245/343 (71%), Gaps = 0/343 (0%) Strand=Plus/Plus Query 279711 GGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTA 279770 || || |||||||||||||||||||| | || ||||| || || ||||| || | Sbjct 587304 GGCGGCTGGAAGATGAAGCTGGCCCTGGCGCGGGCCATGCTCATGAACGCCGACATCATG 587363 Query 279771 CTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTAC 279830 ||||| |||||||| |||||||| ||||| |||||||| ||||| | |||| Sbjct 587364 CTGCTGGATGAGCCCACCAACCATCTGGACGTGACCAACGTGCAGTGGCTGATCAACTAC 587423 Query 279831 CTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGAT 279890 || | || ||| || | || | | ||||| |||||||| |||||||| || Sbjct 587424 CTGGTGGGCCTCAAGGGCGTCACCTCGGTGGTCGTCTCCCACGACTCGGGCTTCCTGGAC 587483 Query 279891 GCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCACATCGGC 279950 ||||| ||||| ||||||| ||||| ||| | || | |||||| ||| || | ||| Sbjct 587484 GCCGTCTGCTCCTCCATCATCCACTACGAGGACAACTTCAAGCTCAAGAAGTACCTGGGC 587543 Query 279951 AACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGAAGGAC 280010 |||||||| || ||| ||||||| ||||| ||||||||||| |||| ||| Sbjct 587544 AACCTGTCCAAGTTTGTGCAGCAGCGCCCCGAGGCCGCCGCCTACTACTCCCTGGCCGAC 587603 Query 280011 GCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGG 280053 ||| || |||||||| | || ||||| || || ||||||| Sbjct 587604 GCCTCCACCAAGTGGTCCCTGCCCGAGCCCGGCTTCCTGGAGG 587646 Score = 132 bits (146), Expect = 1e-25 Identities = 108/131 (82%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 280251 GTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATC 280310 || |||||||| |||||| |||| | || ||||| || |||||||| ||||||||||| Sbjct 588192 GTGTGGAAGCACCCCAACCTGCGCGTCGCCTACGTGGCGCAGCACGCCTTCCACCACATT 588251 Query 280311 GAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGCAAGTGGGCAG 280370 |||||||||||||||||||| || ||||| ||||| |||||||||||||| | || || Sbjct 588252 GAGAACCACCTGGACATGACCCCCAACCAGTACATCCAGTGGCGCTATGCCACCGGCGAG 588311 Query 280371 GATCTGGAGTC 280381 || | ||||| Sbjct 588312 GACCGCGAGTC 588322 Score = 118 bits (130), Expect = 2e-21 Identities = 233/338 (69%), Gaps = 5/338 (1%) Strand=Plus/Plus Query 278642 CTTCCTCCCCGAAATTGTTCCTATGTTGTCGGAGTGCATGGTAGATCTCCGCCCTTCGGT 278701 || ||| ||||| ||||| || || || | | |||||||| || ||| || | || Sbjct 585142 CTACCTGCCCGAGATTGTGCCCGTGGTGACCAACTGCATGGTGGACCTCAAGCCCACCGT 585201 Query 278702 GAAGGTAGCTGCAAA-GACTGCTCTCATCAAGTGTTGTGCGTCCATCGGCAACAAGGACA 278760 | | || || | ||| || || | |||||| || || |||| |||||| |||| Sbjct 585202 GCGCGCCGCCGCCACCGAC-GCCCTGACCAAGTGCTGCGCCGCCATTGGCAACCGCGACA 585260 Query 278761 TCGAACCATTCATTGCCCATCTGATC-GCTGCAATCTCTGATAGCAGTCAGGTCCCGGAA 278819 | || || || | |||| |||||| |||||| || | ||| |||| || || Sbjct 585261 TTGAGCCCTTTGTGCCCCACCTGATCCGCTGCA-TCGGCGCCCCCAGCGAGGTGCCCGAC 585319 Query 278820 TGCGTCCATCAGCTATCTGCAACCACATTCGTCCAGACCGTTGATGCTCGCACTCTTGCT 278879 ||||| || |||| ||||| ||||| || |||||| | || || || |||||||| | Sbjct 585320 TGCGTGCACAAGCTCTCTGCCACCACGTTTGTCCAGTCGGTGGACGCGCGCACTCTGTCC 585379 Query 278880 GTCCTGGTACCTCTGCTATGCCGTGGTATTGTGGACCGCACTACCGTGGTGCGCCGCAAG 278939 ||||||| || ||||| || || | |||||||| || | ||||||||| Sbjct 585380 ATCCTGGTGCCCCTGCTCGTGCGCGGCCTGACCGACCGCACCACGCCCATCCGCCGCAAG 585439 Query 278940 ACCTGTGTCATCATCAACAACATGGCCAAGCT-CGTGG 278976 | || ||||||||| ||||||||||||| | ||||| Sbjct 585440 GCGTGCGTCATCATCCGCAACATGGCCAAGGTGCGTGG 585477 Score = 98.7 bits (108), Expect = 2e-15 Identities = 202/296 (68%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 280859 TGGCGGCGGCGTCGTAGTCATTTCTCA-CAGCACAGAATTTGTCAAGTCTGTGTGCTCCG 280917 ||||||||| || || || | || || ||| || |||||||| |||||| | Sbjct 589350 TGGCGGCGGTGTTGTCATCGTCAGCCATCACCAC-GAGTTTGTCAACCAGGTGTGCCAGG 589408 Query 280918 AGATGTGGACAGTGGGGGGAGGCAAGGTTGACATCACAGGTCAGTCTGCAGCCACCCTAG 280977 ||| |||||| ||||| || |||||| |||||||| || |||||||| || | || | Sbjct 589409 AGAAGTGGACCGTGGGCGGCGGCAAGTGCGACATCACCGGCCAGTCTGCCGCGGCGCTGG 589468 Query 280978 AGGCGGCCAAGATCGAGCTCAAGCGGGAGACCGAGTACACTGATGCTCTTGGTAACACCC 281037 | || ||| | ||| |||||| || ||| |||||| || |||| |||||| Sbjct 589469 ATGCCATGAAGCTGGAGTGGAAGCGGCAGGAGGAGACCACTGACGCCTTTGGCAACACCA 589528 Query 281038 ACAAGGTAAAGGAAGAGAAGCGGGAGCTGACTCGTCAAGAAAAGAAGCAACGCGCTAAGT 281097 |||| | |||| | ||| ||||||| | || | || |||||| || || ||| Sbjct 589529 TCAAGATCAAGGCACCCAAGAAGGAGCTGTCCCGCAAGGAGAAGAAGGCTCGGGCCAAGG 589588 Query 281098 CACGGAAGATGC--GGAAGGCGCGTGGCGAGGAGGTGTCTGACAGCGAGGATGAGT 281151 | | | ||| || | ||| |||||||||||||| || |||||| |||| Sbjct 589589 CCA--ACGCTGCACGGCGTGAGCGCGGCGAGGAGGTGTCCGATGACGAGGACGAGT 589642 Score = 93.3 bits (102), Expect = 9e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| || ||||| || || |||||||| ||||| ||||| ||| Sbjct 586465 GGCGAGGACCTGTGCAACTGCGAGTTCTCCCTGGCCTATGGTGGCAAGATCCTGCTCAAC 586524 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 ||||||| || | ||||| ||| | || || || || ||| ||||| || || Sbjct 586525 AACGCCCGCCTGCACCTGAAGCGCGGCCAGCGCTACGGCCTGTGCGGCCCCAACGGCGCC 586584 Query 279465 GGTAAGAGCACTCTAATGCGCGCCAT 279490 || ||| ||| || ||||||||||| Sbjct 586585 GGCAAGTCCACACTCATGCGCGCCAT 586610 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || ||||| || ||||| ||||||||||| || || || | || || || ||||||| Sbjct 589061 ATCCGCGGCCTGTCTGGCGGCCAGAAGGTGAAGCTGGTGCTGGGTGCCGCCATGTGGCAG 589120 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 || || ||| | | || || || ||||| |||||||| |||||||||||| |||||| Sbjct 589121 CAGCCCCACATCCTGGTGCTGGATGAGCCCACCAACTACCTGGACCGCGAGTCGCTGGGC 589180 Query 280833 GC 280834 || Sbjct 589181 GC 589182 >seq1 Length=3119887 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 2024346 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2024405 Query 142564 CCCACATCGGGCA 142576 ||||||| ||||| Sbjct 2024406 CCCACATTGGGCA 2024418 Score = 104 bits (114), Expect = 5e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 142508 GGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCA 142567 ||||||||||||||||||||||| || ||||||| || |||||||||||||||||||||| Sbjct 1990599 GGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCA 1990540 Query 142568 CATCGGGCA-GAAG 142580 ||| ||||| |||| Sbjct 1990539 CATTGGGCACGAAG 1990526 >seq3 Length=2414369 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 |||||| ||||||||||| ||||| |||||||| | ||||| ||||| | || Sbjct 915911 GTGCAGTCCCTCGTCGCGCGAGATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCC 915970 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 || ||| ||||||||||||| | ||| ||||| || ||||| | | ||||| || || Sbjct 915971 GCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATGCCCTCCACGCA 916030 Query 251964 CACCCATGCAACAAGGCGCTC 251984 | | | |||| |||||||| Sbjct 916031 CGCAAACGCAATCAGGCGCTC 916051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027831347968174