Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq12 205 2e-47 seq4 187 5e-42 seq1 127 4e-24 seq3 98.7 2e-15 seq19 96.9 6e-15 seq20 87.8 3e-12 >seq12 Length=1469606 Score = 205 bits (226), Expect = 2e-47 Identities = 251/343 (73%), Gaps = 0/343 (0%) Strand=Plus/Minus Query 225282 CCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCAGGTCGTAGT 225341 |||||||||| ||||||||||| | ||||||||| ||||| |||| ||||| Sbjct 587646 CCTCCAGGAAGCCGGGCTCGGGCAGGGACCACTTGGTGGAGGCGTCGGCCAGGGAGTAGT 587587 Query 225342 AAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGTGCTTCGTGA 225401 | | || |||||||| |||| ||| || |||||||| || |||| |||| ||| Sbjct 587586 AGGCGGCGGCCTCGGGGCGCTGCTGCACAAACTTGGACAGGTTGCCCAGGTACTTCTTGA 587527 Query 225402 GCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGT 225461 |||||| ||| | |||||| || | || | ||||| || ||||| |||||||| |||| Sbjct 587526 GCTTGAAGTTGTCCTCGTAGTGGATGATGGAGGAGCAGACGGCGTCCAGGAAGCCCGAGT 587467 Query 225462 CGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATGAGCCATG 225521 ||||||| || | | || | ||| | | |||||| |||| |||| ||||| Sbjct 587466 CGTGGGAGACGACCACCGAGGTGACGCCCTTGAGGCCCACCAGGTAGTTGATCAGCCACT 587407 Query 225522 CCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAA 225581 ||||||| | ||||||| ||||| || || || ||||| |||| |||||| || | | Sbjct 587406 GCACGTTGGTCACGTCCAGATGGTTGGTGGGCTCATCCAGCAGCATGATGTCGGCGTTCA 587347 Query 225582 TGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 |||| ||||| |||| || | ||||||||| |||||||| || Sbjct 587346 TGAGCATGGCCCGCGCCAGGGCCAGCTTCATCTTCCAGCCGCC 587304 Score = 167 bits (184), Expect = 4e-36 Identities = 124/144 (86%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 224954 GACTCCAGGTCCTGGCCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCC 225013 ||||| |||||| ||| | |||||| ||||||||||||||||||||||||||||||||| Sbjct 588322 GACTCGCGGTCCTCGCCGGTGGCATAGCGCCACTGGATGTACTGGTTGGGGGTCATGTCC 588263 Query 225014 AGGTGGTTCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGA 225073 |||||||||||||| |||||||| || ||||| || ||||| || | ||||| |||||| Sbjct 588262 AGGTGGTTCTCAATGTGGTGGAAGGCGTGCTGCGCCACGTAGGCGACGCGCAGGTTGGGG 588203 Query 225074 TGCTTCCACACAGAGCCCCGAGTC 225097 ||||||||||| ||||| || || Sbjct 588202 TGCTTCCACAC-CAGCCCAGACTC 588180 Score = 134 bits (148), Expect = 3e-26 Identities = 201/284 (71%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 226406 GTGGTGCGCTCCGCGAGACCGCGGCAGATGAGGGGCACGAGCACGGCAAGGGTCCGGGCA 226465 |||||||| || | || ||||| || |||||||| || | || || || || || Sbjct 585423 GTGGTGCGGTCGGTCAGGCCGCGCACGAGCAGGGGCACCAGGATGGACAGAGTGCGCGCG 585364 Query 226466 TCCACGGTCTGGACAAAAGTGGTCGCGGACAGCTTGTGGACGCACTCGGGGACCTGGCTC 226525 ||||| | ||||||||| ||||| || || |||||||| ||||| ||||| |||| ||| Sbjct 585363 TCCACCGACTGGACAAACGTGGTGGCAGAGAGCTTGTGCACGCAGTCGGGCACCTCGCTG 585304 Query 226526 GTGTCGGAAATAGACTCGATGAGGTGGGGCACAAAGGGGTCAATGTCCTTGTTGCCAATG 226585 | | || || | ||| ||||||||||||||||| |||||||| |||||||||| Sbjct 585303 GGGGCGCCGATGCAGCGGATCAGGTGGGGCACAAAGGGCTCAATGTCGCGGTTGCCAATG 585244 Query 226586 GACTTGCAGCACATGACCAGAGTGTCCTTGGCAGCATCCTTCAC---AGCCTTGCGGATG 226642 | ||||||| || ||| | ||| |||| || | ||| | ||| || | Sbjct 585243 GCGGCGCAGCACTTGGTCAGGGCGTCGGTGGCGGCGGCGCGCACGGTGGGCTT---GAGG 585187 Query 226643 TCAACCATGCAGTCCGCAAGGATGGGGACAATTTCGGGAAGATA 226686 || |||||||||| | | | ||| ||||| ||||| || || Sbjct 585186 TCCACCATGCAGTTGGTCACCACGGGCACAATCTCGGGCAGGTA 585143 Score = 134 bits (148), Expect = 3e-26 Identities = 106/127 (83%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 224501 GCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGG 224560 ||||| |||||||||||||| ||| |||| || ||||||||||| | | | |||||| Sbjct 589182 GCGCCCAGCGACTCGCGGTCCAGGTAGTTGGTGGGCTCATCCAGCACCAGGATGTGGGGC 589123 Query 224561 CACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGG 224620 |||||||| ||| ||||| | |||||||||||||||||| |||||||| ||||||||| Sbjct 589122 TGCTGCCACATGGCGGCACCCAGCACCAGCTTCACCTTCTGGCCGCCAGACAGGCCGCGG 589063 Query 224621 ATCCGCG 224627 ||| ||| Sbjct 589062 ATCTGCG 589056 Score = 131 bits (144), Expect = 3e-25 Identities = 108/132 (82%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 225865 CTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCG 225924 |||||| ||||||||||| ||| |||||||| | | |||||||| | || ||||| Sbjct 586590 CTTGCCGGCGCCGTTGGGGCCGCACAGGCCGTAGCGCTGGCCGCGCTTCAGGTGCAGGCG 586531 Query 225925 CGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTC 225984 | | ||| || |||||||||||||||||||| |||||||||||||| | ||||||||| Sbjct 586530 GGCGTTGTTGAGCAGGATCTTGCCACCATAGGCCAGGGAGAACTCGCAGTTGCACAGGTC 586471 Query 225985 CTCACCCTCCTC 225996 ||| |||||||| Sbjct 586470 CTCGCCCTCCTC 586459 Score = 89.7 bits (98), Expect = 9e-13 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 224734 GTCAATGTCGGCAAGCAGCTTCTGGAAACCGAATTCCTCGAGCTTCTCGCGGACCATCCA 224793 ||| ||||||| |||| ||||||||| || | |||||||| ||||| || ||| Sbjct 588681 GTCGATGTCGGTGAGCATCTTCTGGAAGCCCATCTCCTCGAGGCGGTCGCGTGTCAGCCA 588622 Query 224794 GGAAGCAGACTCGTCGTTCTTCCAGAACACCTCATACTCGTAGGTGCGCTTGAACTTGCG 224853 | | | | ||| |||||| |||||| ||||||||| |||||||| |||||| Sbjct 588621 GCTGGTCTCCGCCTCGCCCTTCCACTGCACCTCGTACTCGTAGCCGCGCTTGAGCTTGCG 588562 Query 224854 GCG-GCCACCAA-TACGGTCCAGGCGCTTCTTGACGCCGTCCACTACCTTGATTTCGTAC 224911 ||| |||| || | | |||| | ||| ||||||||||| ||||||| || | | Sbjct 588561 GCGCGCCAGCAGCTTC--TCCACCACCCGCTTCACGCCGTCCACCACCTTGACCTCCTTC 588504 Query 224912 ATCTTCT 224918 ||||||| Sbjct 588503 ATCTTCT 588497 >seq4 Length=2291561 Score = 187 bits (206), Expect = 5e-42 Identities = 207/276 (75%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 173461 CCCAAAATTTATTCTTCGCGCAACCCGTGGCCTGGACCTCCCCATCCACGGGGACGGCGG 173520 ||| || || | || ||||| | ||| |||||||| || ||||||||||| |||||| Sbjct 1268896 CCCCAAGTTCACGCTGCGCGCCAACCGCGGCCTGGATCTGCCCATCCACGGCGACGGCCT 1268837 Query 173521 GGCTTTGCGGTCGTATTTGTATGTTGATGACGTGGCAGAGGCTTACATTACTATTTTGCT 173580 |||| |||||||||| ||||||| || || ||||| || || ||||| || | |||| Sbjct 1268836 GGCTGTGCGGTCGTACCTGTATGTGGAGGATGTGGCGGACGCGTACATCACCGTACTGCT 1268777 Query 173581 CAAGGGCAATGTCGGGGAAACGTACAACATTGGCACACAGAAGGAGCGCAGTGTTGTAGA 173640 ||||||| || ||||| ||||||||||| ||||| |||||||||||||| || || || Sbjct 1268776 CAAGGGCGTGGTGGGGGAGACGTACAACATCGGCACGCAGAAGGAGCGCAGCGTGGTGGA 1268717 Query 173641 TGTTGCGCATGATATTTGCAAGATTTTCAACAGGGACTCCGATACTGCCATTTGGCATGT 173700 || || || || |||||||| |||| | |||| ||| || ||| ||| || Sbjct 1268716 CGTGGCCGCCGACATCTGCAAGATGTTCAGCCTGGACCCCGCCACGCACATCAAGCACGT 1268657 Query 173701 GAAAGATCGTGCATTCAATGACCGTCGGTATTTTAT 173736 || || || |||||||| ||||| || || || || Sbjct 1268656 CAAGGACCGCGCATTCAACGACCGCCGCTACTTCAT 1268621 Score = 176 bits (194), Expect = 8e-39 Identities = 157/197 (80%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 173264 GTATACGGCGAGAGCAGTCTGGGCAAAAAAGAAGGCCTCGATGAACACTCGTCCCTCGAG 173323 || |||||||||||||| |||||||| | || ||||| | || ||| | || ||| Sbjct 1269254 GTGTACGGCGAGAGCAGCCTGGGCAAGACGGAGGGCCTGAAGGAGCACAGCCCGCTGGAG 1269195 Query 173324 CCAACAAACCCATATGCAGCAGCCAAGGCTGGTGCCGAAATGATGGCACGTGCATATCAC 173383 || || ||||| || | || |||||||| || || || |||||||| || || || ||| Sbjct 1269194 CCCACCAACCCCTACTCGGCGGCCAAGGCGGGGGCGGAGATGATGGCGCGCGCCTACCAC 1269135 Query 173384 ACATCGTACAAGCTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCGCATCAG 173443 || || |||||||| || ||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 1269134 ACCTCCTACAAGCTCCCCGTCATCGTGACGCGCGGCAACAACGTGTACGGCCCGCACCAG 1269075 Query 173444 TTCCCCGAAAAAATGAT 173460 |||||||| || ||||| Sbjct 1269074 TTCCCCGAGAAGATGAT 1269058 Score = 113 bits (124), Expect = 8e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 173038 CAAGTTCGTCAAGGGAGATATTCAATCTACTGATCTCCTGGCGCACGTCCTGAAGCAGGA 173097 || |||| ||||||| || || || || | || || ||| |||| ||||| ||||||| Sbjct 1269891 CAGGTTCATCAAGGGCGACATCCAGTCCTCGGACCTGGTGGTGCACATCCTGGAGCAGGA 1269832 Query 173098 AAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAA 173157 | || |||||| | ||||||||||| |||||||| || ||||||||| || || || Sbjct 1269831 GCAGATCGACACGGTGATGCACTTTGCGGCGCAGACGCACGTGGACAACAGCTTTGGCAA 1269772 Query 173158 CTCGCTGGCATTTACCATGAACAAC 173182 ||| |||| || |||||||||||| Sbjct 1269771 CTCCATGGCCTTCACCATGAACAAC 1269747 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| |||||||| ||||| || |||||||||||| | || || || || Sbjct 1795999 CCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTCCACCTCG 1796058 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||| || || |||||||||||||||||||| |||||||| Sbjct 1796059 AGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 1796102 >seq1 Length=3119887 Score = 127 bits (140), Expect = 4e-24 Identities = 75/78 (96%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2024345 CGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2024404 Query 84515 CCCCACATCGGGCAGGTC 84532 |||||||| ||||| ||| Sbjct 2024405 CCCCACATTGGGCACGTC 2024422 Score = 116 bits (128), Expect = 7e-21 Identities = 67/69 (97%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 84460 GGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCA 84519 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1990599 GGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCA 1990540 Query 84520 CATCGGGCA 84528 ||| ||||| Sbjct 1990539 CATTGGGCA 1990531 >seq3 Length=2414369 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/150 (75%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312 ||| || ||||||||||| ||||| |||||||| || || ||||||||||| || Sbjct 915911 GTGCAGTCCCTCGTCGCGCGAGATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCC 915970 Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCCTCCACG 10370 || || |||||||| |||| |||||| || ||||||| |||||| ||||||||| Sbjct 915971 GCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGA--AGAAGATGCCCTCCACG 916028 Query 10371 CACACCCAGGCGACGAGGCGCTCTGCGAAG 10400 ||| | | || | |||||||| | |||| Sbjct 916029 CACGCAAACGCAATCAGGCGCTCCGAGAAG 916058 >seq19 Length=1056282 Score = 96.9 bits (106), Expect = 6e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 173324 CCAACAAACCCATATGCAGCAGCCAAGGCTGGTGCCGAAATGATGGCACGTGCATATCAC 173383 || || |||||||| | || |||||||| || ||||| | ||| | | || || | | Sbjct 844686 CCCACCAACCCATACTCTGCGGCCAAGGCGGGAGCCGAGCTCATGTCCCTCGCCTACCTC 844745 Query 173384 ACATCGTACAAGCTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCGCATCAG 173443 || || ||||| || || |||||||| || ||| |||| || |||| ||| ||||| ||| Sbjct 844746 ACCTCCTACAACCTCCCCGTCATCGTCACCCGCAGCAATAACGTGTTTGGGCCGCACCAG 844805 Query 173444 TTCCCCGAAAA 173454 ||||||||||| Sbjct 844806 TTCCCCGAAAA 844816 >seq20 Length=953202 Score = 87.8 bits (96), Expect = 3e-12 Identities = 115/159 (72%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 10622 CAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAA 10681 ||||||||||| ||| |||||||| | ||||||||| |||||| | | | || Sbjct 639680 CAGGTTCTCCAGCACGATGCCATCAGACGCGGCAAAGAAGGCGAGGACATACGACACAAA 639621 Query 10682 GTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGAC 10741 ||||||||||||||| |||| || |||||||| || |||||| | || | || Sbjct 639620 GTGGCGCTCATCATCCGTCAGCTT---CCGCCAGTCCCGCATGTCCTGGCTCAGATCCAC 639564 Query 10742 CTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTA 10780 |||||| | |||||| || |||| |||| |||||| Sbjct 639563 CTCCTCTGCCGTCCAGTAACTGGCCTGCGCCTGCTTGTA 639525 Score = 84.2 bits (92), Expect = 4e-11 Identities = 191/282 (68%), Gaps = 4/282 (1%) Strand=Plus/Minus Query 10297 GACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACA 10356 |||| ||||||||| || || ||||||||| |||| |||||| || || ||||| Sbjct 640335 GACCCGGCATGAGCTGGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGGAGCCTGAGAAGT 640276 Query 10357 GAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGCGCGAAA 10416 | | ||||||||||||| | | || || || |||||||| ||| ||| | | | | Sbjct 640275 GGATACCCTCCACGCACGCATATGCCACCAGCCGCTCTGCAAAGCAGCTGCTACTCTCTA 640216 Query 10417 AGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCTCGA 10476 | ||| |||||| |||||||| ||| ||||| || || | || | || Sbjct 640215 TCCACTTCATCGCCCACTGCGCCTTCTTCTGGACGCAGGGGATGGTATCCACGGCGTGGA 640156 Query 10477 AGAGCTTGTTACGCTCGGTCT-CGTCCTCAAT-AAGAGCATCAAGGAGCAGGGAGTATTG 10534 ||||| || ||||| |||| |||| ||| | || || || ||||| ||| Sbjct 640155 AGAGCAGGTCGCGCTC-GTCTGGGTCCCGAATGTACTGC-TCCAGCAGCAGCCCGTACAT 640098 Query 10535 CTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA 10576 ||||||||| || |||| || | |||| ||||||| || Sbjct 640097 CTCGCTGTGCACCGCCTCAATGGCACTCTGGAAAGCGTAAAA 640056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921617630604080