Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 140 6e-28 seq20 132 9e-26 seq5 125 1e-23 seq26 116 7e-21 >seq3 Length=2414369 Score = 140 bits (154), Expect = 6e-28 Identities = 131/164 (80%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||| | ||| | || ||| | ||| ||||||||||||||||| ||| ||||| |||| Sbjct 916051 GAGCGCCTGATTGCGTTTGCGTGCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 915992 Query 42759 ATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||||||||||||| || || || |||||||| ||||||||||| ||||||||||| Sbjct 915991 ATCTTCTGGCTCAAGAAGCGCGGACTC-ATGCCCGGCCTCACCTTCTCCAACGAACTCAT 915933 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT 42861 | | |||||||| ||||| | |||||||||||||| |||| Sbjct 915932 CTCGCGCGACGAGGGACTGCACACCGACTTTGCCTGCCTGCTGT 915889 Score = 86.0 bits (94), Expect = 1e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 |||||||||| || || | ||| |||| |||||||| |||||||||||| || Sbjct 915642 AGGAGCGGGTGGCGGAGATTGTGACGCAGGCGGTGGAGATTGAGAAGGAGTTCATCTGCG 915583 Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAAC-CACGACCTCATGTGCAAGTACATCCAG 43010 | ||||||||||| ||| ||||||||||| | || ||||||| | |||||||| || Sbjct 915582 ACGCGCTGCCCGTGGACCTCATCGGCATGAACTCGCG-CCTCATGGGACAGTACATCGAG 915524 Query 43011 TACGTCGCCGACCATCTCCTG 43031 | || || |||| || ||| Sbjct 915523 TTTGTGGCAGACCGCCTGCTG 915503 >seq20 Length=953202 Score = 132 bits (146), Expect = 9e-26 Identities = 206/292 (71%), Gaps = 3/292 (1%) Strand=Plus/Plus Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 ||||||||| | ||||| ||| || |||| ||||||| ||||| ||| || Sbjct 640028 AGAGGTGCAAATCCCGGAGGCCCGCGCTTTTTACGCTTTCCAGAGTGCCATTGAGGCGGT 640087 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 |||| ||| |||||| ||||| | |||||| | ||| || | |||||| | Sbjct 640088 GCACAGCGAGATGTACGGGCTGCTGCTGGAGCAGTACATTCGGGACCCAGACGAGCGCGA 640147 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | ||| ||| | ||| |||| || || |||||| || ||||||||||| | |||||| | Sbjct 640148 CCTGCTCTTCCACGCCGTGGATACCATCCCCTGCGTCCAGAAGAAGGCGCAGTGGGCGAT 640207 Query 42665 CAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGT 42724 || ||||| |||||| | || | || | ||| ||||||| || | | | ||| Sbjct 640208 GAAGTGGATAGAGAGT--AGCAGCTGC-TTTGCAGAGCGGCTGGTGGCATATGCGTGCGT 640264 Query 42725 CGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 ||||| ||| |||||| ||| ||||| ||||||||||||||| ||| || Sbjct 640265 GGAGGGTATCCACTTCTCAGGCTCCTTCTGCTCCATCTTCTGGCTGAAGAAG 640316 >seq5 Length=2244676 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 242837 CCGGGGCGCCCTGATCATCCTGGAAGGCGTCGATCGTTCGGGTAAGTCGACGCAGTGTCG 242896 ||| || ||| | ||| | | || |||| ||| | |||| ||| |||||||| | Sbjct 661653 CCGCGGGGCCTTCATCGTGTTTGAGGGCGCCGACAGGGCGGGCAAGAGCACGCAGTGCCA 661712 Query 242897 CATGCTGGTCAAGGCCCTGCTGGAGATGGGAGTCGAGGCCGAGCTGATGAGGTTCCCGGA 242956 |||||||| || ||| | || | ||| || | ||| |||||| | | ||||| || Sbjct 661713 GATGCTGGTGGAGCACCTCCAGGCGCAGGGCGTGGCGGCGGAGCTGTGGCGCTTCCCCGA 661772 Query 242957 CAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGATCTGGA 243016 | | ||||| || || || ||||||||||||| ||||| || | |||||||| | || Sbjct 661773 CCGAACCACCCCCATTGGCAAGATGATCAACTCCTACCTCACCAGCCAGAGCGATATCGA 661832 Query 243017 CGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGA 243058 |||| | ||| ||||| ||||||||||||||||| ||||| Sbjct 661833 CGATGCAGCCGTGCACCTGCTGTTCTCGGCCAACCGCTGGGA 661874 >seq26 Length=676052 Score = 116 bits (128), Expect = 7e-21 Identities = 180/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 244737 CGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGC 244796 ||||||| ||||| |||||||||||||||||| ||| || ||||||||| |||| Sbjct 478449 CGGTGCACAGGTTGGACGACTTGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGG 478508 Query 244797 AGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGT 244856 || ||||||||| |||||||| || || ||||| | ||| || | |||| | Sbjct 478509 CGGAGTCCTTGTACAGCATGAACGGGTTGCCCGTCTCCACCTGCGCCTCCAGGATGGCAA 478568 Query 244857 TCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGT 244916 ||| || | | ||||||| | |||| || ||||| |||||| || | || Sbjct 478569 ACCACAGCTGCTGCGCCTTGATGACCTTGCGGGCGCGCCCCTCGCGCTCGTACCGCGAGT 478628 Query 244917 ACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACA 244976 | || ||||| ||||| ||||||| ||| | ||||||||| || ||||| | Sbjct 478629 AGAGCGCCTCAAACTCCTCGCCCCAGCAGTCGGCCAGGCCGGGGGACTCGTTGGGGCAGA 478688 Query 244977 TGAGACTCCACTCGCCG 244993 || |||||||||||| Sbjct 478689 ACAGGCTCCACTCGCCG 478705 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 245187 CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGT 245246 ||||||||| ||||| | ||||| |||||||| | |||||||||||| ||||| Sbjct 479353 CGTTGAAGACCCGCAGCATGGGCACGATGCCGTTGCTGGTGCCGTTGGTGCCGCGGATGT 479412 Query 245247 AGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGA 245306 ||| ||| || | | || |||| ||||||| ||| | ||||||||| |||||||| Sbjct 479413 AGGAGCCGGTGGCGCGGATGTTGTGCATGGACAGGCCGATGCCGCCGGCGGACTTGGAGA 479472 Query 245307 TGAGGGCGCAGCTCTTGATGGTGTC 245331 || |||||| ||||| ||||| Sbjct 479473 TGCTGGCGCACTCCTTGAGCGTGTC 479497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334313044640