Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq16 91.5 1e-13 seq13 91.5 1e-13 seq3 91.5 1e-13 seq4 87.8 1e-12 seq7 86.0 5e-12 >seq16 Length=1197677 Score = 91.5 bits (100), Expect = 1e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || ||| ||||||||| |||||||| || ||| Sbjct 458210 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 458151 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| || | || |||| |||||||| ||||| |||||||||||||| || Sbjct 458150 AGGGTGTGGC-CATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 458098 >seq13 Length=1343205 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || ||| ||||||||| |||||||| || ||| Sbjct 880612 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 880671 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||||| ||||| |||||||||||||| || ||| Sbjct 880672 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCGGGCGGG 880731 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 880732 ATCCCCTCCTTGTCC 880746 >seq3 Length=2414369 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || ||| ||||||||| |||||||| || ||| Sbjct 739753 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 739694 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||||| ||||| | |||||||||||| || ||| Sbjct 739693 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGACCAGGCGCTGCTGGTCAGGCGGG 739634 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 739633 ATGCCCTCCTTGTCC 739619 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || ||| ||||||||| || ||||| || ||| Sbjct 739287 CCGCCACGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGCC 739228 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| |||||||| ||||| |||| |||||||| || ||| Sbjct 739227 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCCGCAAAAATCAATCGCTGCTGGTCAGGCGGG 739168 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| || ||| Sbjct 739167 ATGCCCTCCTTATCC 739153 >seq4 Length=2291561 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || ||| ||||||||| |||||||| || ||| Sbjct 1795761 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 1795820 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || |||| |||| |||||||| || || |||||||||||||| || Sbjct 1795821 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTC 1795873 >seq7 Length=1828856 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || ||| ||||||||| |||||||| || ||| Sbjct 864763 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 864822 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | |||||||| ||||| |||||||||||||| || || Sbjct 864823 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 864882 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 864883 ATGCCCTCCTTGTCC 864897 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || ||| ||||||||| |||||||| || ||| Sbjct 865266 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 865325 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | |||||||| ||||| |||||||||||||| || || Sbjct 865326 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 865385 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 865386 ATGCCCTCCTTGTCC 865400 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || ||| ||||||||| |||||||| || ||| Sbjct 865769 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 865828 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | |||||||| ||||| |||||||||||||| || || Sbjct 865829 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 865888 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 865889 ATGCCCTCCTTGTCC 865903 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || ||| ||||||||| |||||||| || ||| Sbjct 870767 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 870826 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | |||||||| ||||| |||||||||||||| || || Sbjct 870827 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 870886 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 870887 ATGCCCTCCTTGTCC 870901 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || ||| ||||||||| |||||||| || ||| Sbjct 871270 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 871329 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | |||||||| ||||| |||||||||||||| || || Sbjct 871330 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 871389 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 871390 ATGCCCTCCTTGTCC 871404 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || ||| ||||||||| |||||||| || ||| Sbjct 871773 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 871832 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | |||||||| ||||| |||||||||||||| || || Sbjct 871833 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 871892 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 871893 ATGCCCTCCTTGTCC 871907 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || ||| ||||||||| |||||||| || ||| Sbjct 866272 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 866331 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || || | |||||||| ||||| |||||||||||||| || Sbjct 866332 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 866384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397060396572028